Phyre 2 alignment of P77434 with d1m6sa

Job Description P77434
Confidence 100.00% Date Thu Jan 5 12:29:17 GMT 2012

Rank 95 Aligned Residues 331

% Identity 18% Template d1m6sa_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	I	D	F	S	M	G	N	P	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A
Query Conservation
Alig confidence					.																					.	.																									.	.	.	.	.	.	.	.	.
Template Conservation					.																					.	.																									.	.	.	.	.	.	.	.	.
Template Sequence	M	I	D	L	.	R	S	D	T	V	T	K	P	T	E	E	M	R	K	A	M	A	Q	A	E	.	.	V	G	D	D	V	Y	G	E	D	P	T	I	N	E	L	E	R	L	A	A	E	T	F	G	.	.	.	.	.	.	.	.	.	K	E	A	A	L	F	V	P	S	G	T	M	G	N	Q	V	S	I	M	A
Template Known Secondary structure					.	S		G	G	G													T			.	.				G	G	G	T																T	T	.	.	.	.	.	.	.	.	.		S						S
Template Predicted Secondary structure					.																					.	.																									.	.	.	.	.	.	.	.	.
Template SS confidence
	1	.	.	.		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.										.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.

	118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																				.	.	.																																		.	.	.	.
Query SS confidence																				.	.	.																																		.	.	.	.
Query Sequence	T	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	.	.	.	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	.	.	.	.	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L
Query Conservation																				.	.	.																																		.	.	.	.
Alig confidence																				.	.	.																																		.	.	.	.
Template Conservation
Template Sequence	H	T	Q	R	G	D	E	V	I	L	E	A	D	S	H	I	F	W	Y	E	V	G	A	M	A	V	L	S	G	V	M	P	H	P	V	P	G	K	N	G	A	M	D	P	D	D	V	R	K	A	I	R	P	R	N	I	H	F	P	R	T	S	L	I	A	I	E	N	T	H	N	R	S	G	G	R	V	V	P	L
Template Known Secondary structure				T	T							T	T						S	S	T	T						T											T	T											S			S		T	T	S										S	S	B	T	T	T	T	S	B
Template Predicted Secondary structure
Template SS confidence
	69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K
Query Conservation
Alig confidence																																								.	.	.																			.	.	.
Template Conservation																																								.	.	.																			.	.	.
Template Sequence	E	N	I	K	E	I	C	T	I	A	K	E	H	G	I	N	V	H	I	D	G	A	R	I	F	N	A	S	I	A	S	G	V	P	V	K	E	Y	A	.	.	.	G	Y	A	D	S	V	M	F	C	L	S	G	L	C	A	P	V	G	.	.	.	S	V	V	V	G	D	R	D	F	I	E	R	A	R	K	A	R
Template Known Secondary structure														T								T	T																	.	.	.		T		S												S	S		.	.	.
Template Predicted Secondary structure																																								.	.	.																			.	.	.
Template SS confidence
	149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

	271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	W	M	V	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L
Query Conservation
Alig confidence																							.																																												.	.
Template Conservation																							.																																												.	.
Template Sequence	K	M	L	G	G	G	M	R	Q	A	G	V	L	A	A	A	G	I	I	A	L	T	.	K	M	V	D	R	L	K	E	D	H	E	N	A	R	F	L	A	L	K	L	K	E	I	G	Y	S	V	N	P	E	D	V	K	T	N	M	V	I	L	R	T	D	N	.	.	L	K	V	N	A	H	G	F	I	E	A	L
Template Known Secondary structure				T				S	S	T													.		S	S	T	T																			T		B			G	G	G			S	S							T	T	.	.	S	S	S
Template Predicted Secondary structure																							.																																												.	.
Template SS confidence
	224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300

	351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	D	T	H	V	R	F	A	L	I	.	.	E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M	F	R	A
Query Conservation																												.	.
Alig confidence				.									.	.	.	.	.	.										.	.
Template Conservation				.									.	.	.	.	.	.
Template Sequence	R	N	S	.	G	V	L	A	N	A	V	S	.	.	.	.	.	.	D	T	E	I	R	L	V	T	H	K	D	V	S	R	N	D	I	E	E	A	L	N	I	F	E	K	L	F	R	K
Template Known Secondary structure				.	T								.	.	.	.	.	.	T	T								T	T	S
Template Predicted Secondary structure				.									.	.	.	.	.	.
Template SS confidence
	301	.	.		.	.	.	.	.	.	310	.							.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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