Phyre 2 alignment of P77434 with d1iuga

Job Description P77434
Confidence 99.97% Date Thu Jan 5 12:29:17 GMT 2012

Rank 119 Aligned Residues 330

% Identity 13% Template d1iuga_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 2.20

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	L	D	H	G	D	T	V	L
Query Conservation
Alig confidence																	.	.																									.	.	.	.	.	.	.
Template Conservation																	.	.																									.	.	.	.	.	.	.
Template Sequence	P	V	R	L	H	P	K	A	L	E	A	L	A	R	P	Q	.	.	L	H	H	R	T	E	A	A	R	E	V	F	L	K	A	R	G	L	L	R	E	A	F	R	.	.	.	.	.	.	.	T	E	G	E	V	L	I	L	T	G	S	G	T	L	A	M	E	A	L	V	K	N	L	F	A	P	G	E	R	V	L
Template Known Secondary structure	S													S			.	.			T	T	S																			T	.	.	.	.	.	.	.		S	S							S																T	T
Template Predicted Secondary structure																	.	.																									.	.	.	.	.	.	.
Template SS confidence
	9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.								.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.

	127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L
Query Conservation
Alig confidence																																					.	.	.
Template Conservation																																					.	.	.
Template Sequence	V	P	V	Y	G	K	F	S	E	R	F	Y	E	I	A	L	E	A	G	L	V	V	E	R	L	D	Y	P	Y	G	D	T	P	R	P	E	.	.	.	D	V	A	K	E	G	Y	A	G	L	L	L	V	H	S	E	T	S	T	G	A	L	A	D	L	P	A	L	A	R	A	F	K	E	K	N	P	E	G	L	V
Template Known Secondary structure					S													T	T										T	T					T	T	.	.	.	T	S			S	S		S						S			T	T	T	T																	T	T
Template Predicted Secondary structure																																					.	.	.
Template SS confidence
	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

	207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.						.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																												.	.	.	.	.
Query SS confidence																												.	.	.	.	.
Query Sequence	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	.	.	.	.	.	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L
Query Conservation																												.	.	.	.	.
Alig confidence																												.	.	.	.	.																																			.	.
Template Conservation																																																																			.	.
Template Sequence	G	A	D	M	V	T	S	L	L	V	G	E	V	A	L	E	A	M	G	V	D	A	A	A	S	G	S	Q	G	L	M	C	P	P	G	L	G	F	V	A	L	S	P	R	A	L	E	R	L	K	P	R	G	Y	Y	L	D	L	A	R	E	L	K	A	Q	K	.	.	E	G	E	S	A	W	T	P	A	I	N	L
Template Known Secondary structure					T	T	T	B	T	T	B				S	G	G	G	T		S													S														T					S	S	T	T										T	.	.	T	T			S	S
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.

	282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	W	M	V	.	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P
Query Conservation																																									.
Alig confidence																																									.																.	.	.												.
Template Conservation																																																									.	.	.												.
Template Sequence	V	L	A	V	A	A	V	L	E	E	V	L	P	R	L	E	E	H	L	A	L	K	A	W	Q	N	A	L	L	Y	G	V	G	E	E	G	G	L	R	P	V	P	K	R	F	S	P	A	V	A	A	F	Y	L	P	E	.	.	.	G	V	P	Y	A	R	V	K	E	A	F	.	A	Q	R	G	A	V	I	A	G
Template Known Secondary structure												G	G	G																						T	T				S		S	S	B		T	T								T	.	.	.	T											.		T	T	T
Template Predicted Secondary structure																																																									.	.	.												.
Template SS confidence
	236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.

	361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence	G	I	G	F	G	D	Y	G	D	T	H	V	R	F	A	L	I	.	.	E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M	F	R	A
Query Conservation																		.	.
Alig confidence		.	.															.	.
Template Conservation		.	.
Template Sequence	G	.	.	Q	G	P	L	K	G	K	V	F	R	L	S	L	M	G	A	Y	D	R	Y	E	A	L	G	V	A	G	M	F	R	E	V	L	E	E
Template Known Secondary structure		.	.		G	G	G	T	T	T								S	S
Template Predicted Secondary structure		.	.
Template SS confidence
	312			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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