Job Description P77434 Confidence 100.00% Date Thu Jan 5 12:29:17 GMT 2012 Rank 50 Aligned Residues 370 % Identity 15% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.						.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																												.								.	.	.	.	.
Query SS confidence																												.								.	.	.	.	.
Query Sequence		R	I	D	R	L	P	P	Y	V	F	N	I	T	A	E	L	K	M	A	A	R	R	R	G	E	D	.	I	I	D	F	S	M	G	.	.	.	.	.	N	P	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R
Query Conservation																												.								.	.	.	.	.
Alig confidence																												.								.	.	.	.	.																					.
Template Conservation																																																													.
Template Sequence		K	G	K	K	L	K	D	V	I	F	V	T	A	G	Q	A	Q	A	D	A	K	E	N	G	R	E	N	V	V	N	G	T	L	G	A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	S	D	S	.	E	H	V	G	Y	A	P	I	A	G	I	P	D	F	L	C	A	A	E	K
Template Known Secondary structure		T	T																							G	G	G						S	S			B		T	T	S		B												T					.				S				T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence												.	.																																																																		.	.	.
Template Conservation												.	.
Template Sequence		E	C	F	G	N	F	R	P	E	G	.	.	H	I	R	S	I	A	T	A	G	G	T	G	G	I	H	H	L	I	H	N	Y	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	F	D	E	H	N	N	F	N	H	E	A	F	Q	N
Template Known Secondary structure					G	G	G			S	S	.	.								S														S		T	T							S	S			T									T	T								S	B		T	T	S	S	B
Template Predicted Secondary structure												.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
				163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.							.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.	.																																								.	.	.	.	.	.
Query SS confidence		.	.																																								.	.	.	.	.	.
Query Sequence		.	.	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	.	.	.	.	.	.	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D
Query Conservation		.	.																																								.	.	.	.	.	.
Alig confidence		.	.																																								.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	N	E	L	A	A	K	Q	T	N	V	V	V	I	F	N	T	P	G	N	N	P	T	G	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N	K	F	S	H	L	P
Template Known Secondary structure											S									S	S		T	T	T																						T	S	S										T	T	G	G	G	S	S							G	G	G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		235				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.								260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.							.	.	.	.	.	.
Predicted Secondary structure			.	.	.																									.	.	.	.	.	.	.																																		.	.	.	.	.	.
Query SS confidence			.	.	.																									.	.	.	.	.	.	.																																		.	.	.	.	.	.
Query Sequence		V	.	.	.	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	.	.	.	.	.	.	.	K	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	.	.	.	.	.	.	Q	Q	C	V	R	D
Query Conservation			.	.	.																									.	.	.	.	.	.	.																																		.	.	.	.	.	.
Alig confidence			.	.	.																									.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	I	L	T	C	V	C	Y	S	L	S	K	G	F	T	X	Y	G	Q	R	V	G	A	X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E	Y	E	A	E	R	N	C
Template Known Secondary structure		T	T									S	T	T	T	T	T			S	S										S	S																			T	S	S														T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	W	M	V	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	D	T	H	V	R	F	A	L	I	.
Query Conservation																																																																																	.
Alig confidence																																								.	.	.	.	.	.												.								.	.	.	.	.	.	.										.
Template Conservation																																								.	.	.	.	.	.												.								.	.	.	.	.	.	.
Template Sequence		Y	Y	Q	L	I	R	D	R	A	D	I	F	K	Q	E	A	A	Q	V	G	L	P	X	L	P	Y	R	G	G	F	F	I	T	I	P	T	D	S	.	.	.	.	.	.	A	N	A	I	C	E	E	L	K	K	E	.	H	I	Y	V	I	A	L	.	.	.	.	.	.	.	A	N	G	I	R	I	A	A	C	G
Template Known Secondary structure																					T								S	S	S							T	T	.	.	.	.	.	.											T	.	T							.	.	.	.	.	.	.	S	S						G	G	G
Template Predicted Secondary structure																																								.	.	.	.	.	.												.								.	.	.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.							.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.								.	.	.	.	.	.	.	390	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M	F	R	A	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	K	C	Q	X	T	G	L	A	E	K	I	Y	N	A	X	K	S	L	G
Template Known Secondary structure		S						T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions