Job Description P77434 Confidence 100.00% Date Thu Jan 5 12:29:17 GMT 2012 Rank 9 Aligned Residues 385 % Identity 23% Template c3qguB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii Resolution 1.55 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.
Predicted Secondary structure																			.										.	.																																								.	.	.	.
Query SS confidence																			.										.	.																																								.	.	.	.
Query Sequence		A	D	T	R	P	E	R	R	F	T	R	I	D	R	L	P	P	.	Y	V	F	N	I	T	A	E	L	.	.	K	M	A	A	R	R	R	G	E	D	I	I	D	F	S	M	G	N	P	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	.	.	.	.	T	H	G	Y	S	T	S	R
Query Conservation																			.										.	.																																								.	.	.	.
Alig confidence																			.										.	.																																								.	.	.	.
Template Conservation
Template Sequence		A	G	T	I	D	V	Q	R	N	E	N	F	G	K	L	R	A	G	Y	L	F	P	E	I	A	R	R	R	K	A	H	Q	E	K	N	P	D	A	K	I	I	S	L	G	I	G	D	T	T	E	P	L	P	K	Y	I	A	D	A	M	A	K	A	A	A	G	L	A	T	R	E	G	Y	S	G	Y	G	A	E	Q
Template Known Secondary structure																		S	S																		T	T							S	S	S																					G	G	G	S						S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G
Query Conservation
Alig confidence																							.	.	.														.
Template Conservation																							.	.	.														.
Template Sequence		G	Q	G	A	L	R	E	A	V	A	S	T	F	Y	G	H	A	G	R	A	A	.	.	.	D	E	I	F	I	S	D	G	S	K	C	D	I	.	A	R	I	Q	M	M	F	G	S	K	P	T	V	A	V	Q	D	P	S	Y	P	V	Y	V	D	T	S	V	M	M	G	M	T	G	D	H	N	G	T	G	F	D
Template Known Secondary structure																T	T	T	T			G	.	.	.	G	G					S							.									S	S	S							S			T									T	T		S			B		S	S	S	B	T
Template Predicted Secondary structure																							.	.	.														.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		V	D	F	F	N	E	L	E	R	A	I	.	.	.	.	.	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.
Template Conservation
Template Sequence		G	I	E	Y	M	V	C	N	P	D	N	H	F	F	P	D	L	S	K	A	K	R	T	D	I	I	F	F	C	S	P	N	N	P	T	G	A	A	A	T	R	A	Q	L	T	E	L	V	N	F	A	R	K	N	G	S	I	L	V	Y	D	A	A	Y	A	L	Y	I	S	N	P	D	C	P	K	T	I	Y	E	I
Template Known Secondary structure		T								G	G	G	T	T				T	T	S					S						S	S		T	T	T																				T								T	T	G	G	G				T	T	S		S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.									.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																					.	.	.	.	.	.	.	.																											.
Query SS confidence																																					.	.	.	.	.	.	.	.																											.
Query Sequence		P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	.	.	.	.	.	.	.	.	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	.	G	D	Q	Q	C	V	R	D	I	A
Query Conservation																																					.	.	.	.	.	.	.	.																											.
Alig confidence																																					.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		P	G	A	D	E	V	A	I	E	T	C	S	F	S	K	Y	A	G	F	T	G	V	R	L	G	W	T	V	V	P	K	A	L	K	Y	A	N	G	E	P	V	H	A	D	W	N	R	V	M	T	T	C	F	N	G	A	S	N	I	V	Q	A	G	G	L	A	C	L	Q	P	E	G	L	K	E	M	N	A	M	I
Template Known Secondary structure		T	T	G	G	G	T								S	G	G	G	T		T	T										T	T		B		T	T	S		B												S																T	S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	W	M	V	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	D	T	H	V	R	F	A	L	I	E	N	R
Query Conservation
Alig confidence																																					.	.	.	.
Template Conservation																																					.	.	.	.
Template Sequence		K	F	Y	K	E	N	A	Q	I	L	K	T	T	F	T	E	M	G	F	S	V	Y	G	G	D	D	A	P	Y	I	W	V	G	F	P	.	.	.	.	G	K	P	S	W	D	V	F	A	E	I	L	E	R	C	N	I	V	T	T	P	G	S	G	Y	G	P	A	G	E	G	F	V	R	A	S	A	F	G	S	R
Template Known Secondary structure																		T	T						S	S	S	S	S							T	.	.	.	.	T	S																				G	G	G	G		G	G	G	T	T								S
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.					.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	I	R	Q	A	I	R	G	I	K	A	M	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	I	L	E	A	V	R	R	F	K	E	A	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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