Job Description P77434 Confidence 100.00% Date Thu Jan 5 12:29:17 GMT 2012 Rank 35 Aligned Residues 370 % Identity 18% Template c3pplB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution Resolution 1.25 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																							.	.	.	.	.																					.	.
Query SS confidence																																							.	.	.	.	.																					.	.
Query Sequence		F	T	R	I	D	R	L	P	P	Y	V	F	N	I	T	A	E	L	K	M	A	A	R	R	R	G	E	D	I	I	D	F	S	M	G	N	P	.	.	.	.	.	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	.	.	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A
Query Conservation																																							.	.	.	.	.																					.	.
Alig confidence																									.	.	.	.	.										.	.	.	.	.																					.	.
Template Conservation																									.	.	.	.	.
Template Sequence		A	E	R	I	G	L	F	H	E	D	I	K	R	K	F	D	E	L	K	S	K	N	L	.	.	.	.	.	K	L	D	L	T	R	G	K	P	S	S	E	Q	L	D	F	A	D	E	L	L	A	L	P	G	K	G	D	F	K	A	A	D	G	T	D	V	R	N	Y	G	G	L	D	G	I	V	D	I	R	Q	I
Template Known Secondary structure																						T			.	.	.	.	.																T	T	G	G	G	G	G		S		T	T			B		T	T	S		B	T	T	S	S			S	S
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.															.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.
Template Sequence		W	A	D	L	L	G	.	.	.	.	.	.	.	V	P	V	E	Q	V	L	A	G	D	A	S	S	L	N	I	X	F	D	V	I	S	W	S	Y	I	F	G	N	N	D	S	V	Q	P	W	S	K	E	E	T	V	K	W	I	C	P	V	P	G	Y	D	R	H	F	S	I	T	E	R	F	G	F	E	X	I	S
Template Known Secondary structure							T	.	.	.	.	.	.	.	S		G	G	G					S	S																			T	T		S	S		G	G	G	S	S									S												T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.								.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																				.																												.	.
Query SS confidence																																																				.																												.	.
Query Sequence		V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	.	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	.	.
Query Conservation																																																				.																												.	.
Alig confidence																		.																																		.																												.	.
Template Conservation																		.
Template Sequence		V	P	X	N	E	D	G	P	D	X	D	A	V	E	E	L	.	V	K	N	P	Q	V	K	G	X	W	V	V	P	V	F	S	N	P	T	G	F	T	V	T	E	D	V	A	K	R	L	S	A	X	E	T	A	A	P	D	F	R	V	V	W	D	N	A	Y	A	V	H	T	L	T	D	E	F	P	E	V	I	D
Template Known Secondary structure						T	T											.	T	T	S	T	T									S	S		T	T	T																		S	S	T	T								T	T	T	T		B	S	S	S
Template Predicted Secondary structure																		.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
					226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																																	.	.	.
Query SS confidence		.	.	.																																																																	.	.	.
Query Sequence		.	.	.	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	.	.	.	E	G	D	Q	Q	C	V	R	D	I
Query Conservation		.	.	.																																																																	.	.	.
Alig confidence		.	.	.																							.																																										.	.	.
Template Conservation																											.
Template Sequence		I	V	G	L	G	E	A	A	G	N	P	N	R	F	W	A	F	T	S	T	S	K	I	T	L	.	A	G	A	G	V	S	F	F	L	T	S	A	E	N	R	K	W	Y	T	G	H	A	G	I	R	G	I	G	P	N	K	V	N	Q	L	A	H	A	R	Y	F	G	D	A	E	G	V	R	A	V	X	R	K	H
Template Known Secondary structure									T	T		T	T								S	T	T	T	S		.	T	T	T	S																							S																S
Template Predicted Secondary structure																											.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.					.	.	.	.	.	370
Predicted Secondary structure																				.	.	.	.	.																																																.	.	.	.
Query SS confidence																				.	.	.	.	.																																																.	.	.	.
Query Sequence		A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	.	.	.	.	.	G	W	M	V	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	.	.	.	.	G	D	Y	G	D	T
Query Conservation																				.	.	.	.	.																																																.	.	.	.
Alig confidence																				.	.	.	.	.																				.	.	.	.	.																								.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		A	A	S	L	A	P	K	F	N	K	V	L	E	I	L	D	S	R	L	A	E	Y	G	V	A	Q	W	T	V	P	A	G	G	Y	F	I	S	L	D	V	V	P	.	.	.	.	.	G	T	A	S	R	V	A	E	L	A	K	E	A	G	I	A	L	T	G	A	G	S	S	Y	P	L	R	Q	D	P	E	N	K
Template Known Secondary structure																					G	G	G	T								S	B	S	S							S	T	.	.	.	.	.	T												T	T						T	T	T	T	S	G	G	G			T	T	S
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.						.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		371	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		H	V	R	F	A	L	I	.	E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M	F	R	A	D	G
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		N	L	R	L	A	P	S	L	P	P	V	E	E	L	E	V	A	X	D	G	V	A	T	C	V	L	L	A	A
Template Known Secondary structure								S	S	S
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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