 |
Job Description | P77434 | Confidence | 27.36% | Date | Thu Jan 5 12:29:17 GMT 2012 |
Rank | 344 | Aligned Residues | 132 |
% Identity | 14% | Template | c3l6cA_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:serine racemase; |
PDBTitle: x-ray crystal structure of rat serine racemase in complex with2 malonate a potent inhibitor
|
Resolution | 2.20 Å |
|
 |
  |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | |
. | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  | . |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | S | R | G | I | P | R | L | R | R | A | I | S | R | W | Y | Q | D | R | Y | D | V | E | I | D | P | E | S | E | A | I | V | T | I | G | S | K | E | G | L | A | H | L | M | L | A | . |
T | L | D | H | G | D | T | V | L | V | P | N | P | S | Y | P | I | H | I | Y | G | A | V | I | A | G | A | Q | V | R | S | V | P |
Query Conservation |   |
  |   |   |
|   |   |   |
|
|
|
|
|
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |   |   |
|   |   |   |   |   |   | . |   |   |   |   |
|
|   |
|
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|   |
|   |
|   |
|   |   |
|   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |   |   |   |
Template Sequence |   |
Q | K | T | G | S | F | K | I | R | G | A | L | N | A | I | R | G | L | I | P | D | T | L | E | G | K | P | K | A | V | V | T | H | S | S | G | N | H | G | Q | A | L | T | Y | A | A | K | L | E | G | I | P | A | Y | I | V | V | P | Q | T | A | P | N | C | K | K | L | A | I | Q | A | Y | G | A | S | I | V | Y | S | E |
Template Known Secondary structure |   |
S | G | G | G | B | T | T |  |  |  |  |  |  |  |  |  |  |  | S |
| S | S | S | T | T |
|
| S |
|  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
  |
  |   |
151 | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | V | E | G | V | D | F | F | N | E | L | E | R | A | I | R | E | S | Y | P | K | P | K | M | M | I | L | G | F | P | S | N | P | T | A | Q | C | V | E | L | E | F | F | E | K | V | V | A | L | A | K | R | Y | D | V | L | V | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |   |   |   |
|   |
|
|   |
Template Sequence |   |
. |
. |
. |
. |
. |
P | S | D | E | S | R | E | N | V | A | Q | R | I | I | Q | E | T | E | G | I | L | V | H | P | N | Q | E | P | A | V | I | A | G | Q | G | T | I | A | L | E | V | L | N | Q | V | P | L | V | D | A | L | V | V |
Template Known Secondary structure |   |
. | . | . | . | . | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |
|
| S | S | S | S |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |
| T | T |
|
|  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|