Job Description P77434 Confidence 100.00% Date Thu Jan 5 12:29:17 GMT 2012 Rank 83 Aligned Residues 355 % Identity 13% Template c3hqtB_ PDB info PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.														.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.							70	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.																.																								.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.																.																								.	.	.	.	.	.
Query Sequence		R	L	P	P	Y	V	F	N	I	T	A	E	L	K	M	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	R	G	E	D	I	I	D	F	S	M	G	N	P	.	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	.	.	.	.	.	.	Y	S	T	S	R
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.																.																								.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.																.																								.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	P	D	F	I	Q	N	K	I	D	H	Y	I	E	N	Y	F	D	I	N	K	N	G	K	H	L	V	L	G	K	Q	A	S	P	D	D	I	I	L	Q	S	N	D	Y	L	A	L	A	N	H	P	L	I	K	A	R	L	A	K	S	L	L	E	E	Q	Q	S	L	F	M	S	A	S	F	L	Q	N	D	Y
Template Known Secondary structure																			T	T	T	S	T	T	S	S		T	T			S				T	T	S								T	T			T	T														S							S	B	G	G	G	G		S	T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.																																																								.	.
Template Conservation																.	.	.	.	.	.	.	.	.																																																								.	.
Template Sequence		D	K	P	M	I	E	K	R	L	A	K	F	T	G	.	.	.	.	.	.	.	.	.	F	D	E	C	L	L	S	Q	S	G	W	N	A	N	V	G	L	L	Q	T	I	C	Q	P	N	T	N	V	Y	I	D	F	F	A	H	M	S	L	W	E	G	A	R	Y	A	N	A	Q	A	H	P	F	M	H	N	.	.
Template Known Secondary structure		T	S												T	.	.	.	.	.	.	.	.	.		S						S																T	T							T	T	S											T	T								T	T	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																																																								.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.										.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P	.	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R
Query Conservation																				.
Alig confidence		.	.	.	.	.														.																		.	.	.
Template Conservation		.	.	.	.	.																																.	.	.
Template Sequence		.	.	.	.	.	N	C	D	H	L	R	M	L	I	Q	R	H	G	P	G	I	I	V	V	D	S	I	Y	S	T	L	G	T	I	A	P	.	.	.	L	A	E	L	V	N	I	S	K	E	F	G	C	A	L	L	V	D	E	S	H	S	L	G	T	H	G	P	N	G	A	G	L	L	A	E	L	G	L	T	R
Template Known Secondary structure		.	.	.	.	.														S							S	B		T	T	T			B			.	.	.											T	T								T	T	T	B	T	T	B	S	G	G	G							T	T		G	G
Template Predicted Secondary structure		.	.	.	.	.																																.	.	.
Template SS confidence
							154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		E	V	H	F	M	T	A	S	L	A	K	T	F	A	Y	R	A	.	.	G	A	I	W	C	N	N	E	V	N	R	C	V	P	F	I	S	Y	P	A	I	F	S	S	T	L	L	P	Y	E	A	A	G	L	E	T	T	L	E	I	I	E	S	A	D	N	R	R	Q	H	L	D	R	M	A	R	K	L	R	I	G
Template Known Secondary structure		G		S						S	S	S	T	T		S	S		.	.						S	S	S	G	G	G	T											S	B																				T
Template Predicted Secondary structure																			.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																																						.													.	.
Query SS confidence																																																						.													.	.
Query Sequence		L	H	E	A	G	W	M	V	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	.	D	Y	G	D	T	H	V	R	F	A	L	I	.	.	E	N	R	D	R	I	R	Q	A	I	R	G	I
Query Conservation																																																						.													.	.
Alig confidence										.	.														.	.	.															.												.													.	.
Template Conservation										.	.														.	.	.															.
Template Sequence		L	S	Q	L	G	L	T	I	.	.	R	S	E	S	Q	I	I	G	L	E	T	G	D	.	.	.	E	R	N	T	E	K	V	R	D	Y	L	E	S	N	.	G	V	F	G	S	V	F	C	R	P	A	T	S	K	N	K	N	I	I	R	L	S	L	N	S	D	V	N	D	E	Q	I	A	K	I	I	E	V	C
Template Known Secondary structure					T	T				.	.				S	S								S	.	.	.														T	.	T								T	T	S	S		T	T										T	T
Template Predicted Secondary structure										.	.														.	.	.															.
Template SS confidence
		304	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.				.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		391	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	M	F	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	A	V	N	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions