Job Description P77434 Confidence 99.83% Date Thu Jan 5 12:29:17 GMT 2012 Rank 219 Aligned Residues 357 % Identity 15% Template c3h7fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis Resolution 1.50 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.
Query Sequence		I	D	R	L	P	P	Y	V	F	N	I	T	A	E	L	K	M	A	A	R	R	R	G	E	D	I	I	D	F	S	M	G	N	P	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	.	.	.	.	.	.	P	R	L	R	R	A	I	S	R	W
Query Conservation																																																																		.	.	.	.	.	.
Alig confidence																								.	.	.	.											.	.																											.	.	.	.	.	.
Template Conservation																								.	.	.	.											.	.
Template Sequence		L	A	E	V	D	P	D	I	A	E	L	L	A	K	E	L	G	R	Q	R	D	T	.	.	.	.	L	E	M	I	A	S	E	N	F	V	.	.	P	R	A	V	L	Q	A	Q	G	S	V	L	T	N	K	Y	A	E	G	L	P	G	R	R	Y	Y	G	G	C	E	H	V	D	V	V	E	N	L	A	R	D	R
Template Known Secondary structure																							S	.	.	.	.					T	T					.	.									T	S	G	G	G	G							T	T			S	S	S
Template Predicted Secondary structure																								.	.	.	.											.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.						.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																		.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.
Query Sequence		Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	.	.	.	.	.	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L
Query Conservation																																																		.	.	.	.	.
Alig confidence										.	.	.	.																																					.	.	.	.	.
Template Conservation										.	.	.	.
Template Sequence		A	K	A	L	F	G	A	E	.	.	.	.	F	A	N	V	Q	P	H	S	G	A	Q	A	N	A	A	V	L	H	A	L	M	S	P	G	E	R	L	L	G	L	D	L	A	N	G	G	H	L	T	H	G	M	R	L	N	F	S	G	K	L	Y	E	N	G	F	Y	G	V	D	P	A	T	H	L	I	D	M	D
Template Known Secondary structure							T		S	.	.	.	.							S	S															T	T								G	G	G	T			G	G	G	T		T	T	S					S	S									T	T	T		S
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T
Query Conservation
Alig confidence																											.	.	.	.	.																																									.	.	.	.	.
Template Conservation																											.	.	.	.	.																																									.	.	.	.	.
Template Sequence		A	V	R	A	T	A	L	E	F	R	P	K	V	I	I	A	G	W	S	A	Y	P	R	V	L	.	.	.	.	.	D	F	A	A	F	R	S	I	A	D	E	V	G	A	K	L	L	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	S	P	V	P	H	A	D	.	.	.	.	.	V	V	S	T	T
Template Known Secondary structure													S							S	S			S			.	.	.	.	.													T								T	T	T						T	T	S	S			S	T	T	T		S	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.																																									.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																														.	.																														.	.	.	.	.
Query SS confidence																																														.	.																														.	.	.	.	.
Query Sequence		L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	.	.	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	.	.	.	.	.
Query Conservation																																														.	.																														.	.	.	.	.
Alig confidence									.	.	.																																			.	.																														.	.	.	.	.
Template Conservation									.	.	.
Template Sequence		V	H	T	L	G	G	G	.	.	.	R	S	G	L	I	V	G	K	Q	Q	Y	A	K	A	I	N	S	A	V	F	P	G	Q	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	I	A	A	T	P	E	F	A	D	R	Q	R	R	T	L	S	G	A	R	I	I	A	D	R	L	M	A	P	D	V
Template Known Secondary structure									.	.	.	S								G	G	G									T	T	T	T		S	S																	T	S																						S	S
Template Predicted Secondary structure									.	.	.
Template SS confidence
		225	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		315	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.					.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.							.	.	.	380	.	.	.
Predicted Secondary structure													.																																		.	.	.	.																			.	.	.	.	.	.
Query SS confidence													.																																		.	.	.	.																			.	.	.	.	.	.
Query Sequence		H	E	A	G	W	M	V	E	M	P	K	.	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	.	.	.	.	S	P	G	I	G	F	G	D	Y	G	D	T	H	V	R	F	A	L	.	.	.	.	.	.	I	E	N	R	D	R	I
Query Conservation													.																																		.	.	.	.																			.	.	.	.	.	.
Alig confidence													.												.	.													.								.	.	.	.																			.	.	.	.	.	.
Template Conservation																									.	.													.
Template Sequence		A	K	A	G	V	S	V	V	S	G	G	T	D	V	H	L	V	L	V	D	L	R	D	.	.	S	P	L	D	G	Q	A	A	E	D	L	L	.	H	E	V	G	I	T	V	N	R	N	A	V	P	N	D	P	R	P	P	M	V	T	S	G	L	R	I	G	T	P	A	L	A	T	R	G	F	G	D	T	E	F
Template Known Secondary structure				T	T				G	G	G	S		S	S	S							T	T	.	.	S	S											.			T	T									T	T		S	S		T	T	T		S													T
Template Predicted Secondary structure																									.	.													.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	A	I	R	G	I	K	A	M	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	V	A	D	I	I	A	T	A	L	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions