Job Description P77434 Confidence 99.90% Date Thu Jan 5 12:29:17 GMT 2012 Rank 197 Aligned Residues 350 % Identity 13% Template c3fcrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution Resolution 1.80 Å

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		33	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.							.
Query SS confidence														.	.							.
Query Sequence		R	R	G	E	D	I	I	D	F	S	M	G	.	.	N	P	D	G	A	T	.	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E
Query Conservation														.	.							.
Alig confidence														.	.							.															.																															.	.	.
Template Conservation																																					.																															.	.	.
Template Sequence		R	D	G	T	K	L	L	D	A	F	A	G	L	Y	C	V	N	V	G	Y	G	R	Q	E	I	A	E	A	I	A	D	Q	A	R	E	.	L	A	Y	Y	H	S	Y	V	G	H	G	T	E	A	S	I	T	L	A	K	X	I	L	D	R	A	P	K	N	X	.	.	.	S	K	V	Y	F	G	L	G	G	S	D
Template Known Secondary structure		T	T							T	T					T			S		B																.		S						T	T																	S		T	T		.	.	.							S	S
Template Predicted Secondary structure																																					.																															.	.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.
		110	.	.	.	.	.	.	.	.	.	120									.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.														.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	A	H	L	M	L	A	T	L	D	.	.	.	.	.	.	.	.	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	E	T	N	V	K	L	I	W	Y	Y	N	N	I	L	G	R	P	E	K	K	K	I	I	S	R	W	R	G	Y	H	G	S	G	L	V	T	G	S	L	T	G	L	E	L	F	H	K	K	F	D	L	P	V	E	Q	V	I	H	T	E	A	P	Y	Y	F	R	R	E	D	L	N	Q	T	E	E	Q	F	V
Template Known Secondary structure																	T	T		T	T								T	T					S	S							S			G	G	G	T	T	T	T	T		S		T	T							S		G	G	G		S		T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
							159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.	.	.	.																												.
Query SS confidence		.	.	.	.	.																												.
Query Sequence		.	.	.	.	.	N	E	L	E	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	.	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A
Query Conservation		.	.	.	.	.																												.
Alig confidence		.	.	.	.	.																												.																																					.	.
Template Conservation																																																																							.	.
Template Sequence		A	H	C	V	A	E	L	E	A	L	I	E	R	E	G	A	D	T	I	A	A	F	I	G	E	P	I	L	G	T	G	G	I	V	P	P	P	A	G	Y	W	E	A	I	Q	T	V	L	N	K	H	D	I	L	L	V	A	D	E	V	V	T	G	F	G	R	L	G	T	.	.	X	F	G	S	D	H	Y	G	L
Template Known Secondary structure																	G	G	G								S	S	B	S	T	T	T		B				T	T													T								T	T	T	S	S	S	T	T	S	S	.	.	S							T
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.								.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.																				.	.
Query SS confidence																																									.	.	.	.	.	.	.																				.	.
Query Sequence		R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K	S	.	.	.	.	.	.	.	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	.	.	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y
Query Conservation																																									.	.	.	.	.	.	.																				.	.
Alig confidence							.	.	.																																.	.	.	.	.	.	.																				.	.
Template Conservation							.	.	.
Template Sequence		E	P	D	I	I	.	.	.	T	I	A	K	G	L	T	S	A	Y	A	P	L	S	G	S	I	V	S	D	K	V	W	K	V	L	E	Q	G	T	D	E	N	G	P	I	G	H	G	W	T	Y	S	A	H	P	I	G	A	A	A	G	V	A	N	L	K	L	L	D	E	L	N	L	V	S	N	A	G	E	V	G
Template Known Secondary structure				S			.	.	.				G	G	G	T	T	T	S	S																								S		S				T	T	T	T																		T	T
Template Predicted Secondary structure							.	.	.
Template SS confidence
		280	.	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.									.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.
Query Sequence		K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	W	M	V	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	.	.	.	.	.	.	.	.	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	D	T	H	V	R	F	A
Query Conservation																																									.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.												.								.	.	.	.
Template Conservation																																																												.								.	.	.	.
Template Sequence		A	Y	L	N	A	T	X	A	E	A	L	S	Q	H	A	N	V	G	D	V	R	G	E	G	L	L	C	A	V	E	F	V	K	D	R	D	S	R	T	F	F	D	A	A	D	K	I	G	P	Q	I	S	A	K	L	L	E	Q	.	D	K	I	I	A	R	A	.	.	.	.	X	P	Q	G	D	I	L	G	F	A
Template Known Secondary structure													T	T	S	T	T							S	S	S								S	B	T	T	T	T	B				G	G	G														.								.	.	.	.		S	S	S	S
Template Predicted Secondary structure																																																												.								.	.	.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.					.	.	.	.	.	.	.	.	430	.
				376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	I	E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M	F	R	A
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		P	P	F	C	L	T	R	A	E	A	D	Q	V	V	E	G	T	L	R	A	V	K	A
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions