Phyre 2 alignment of P77434 with c3e6gA

Job Description P77434
Confidence 99.90% Date Thu Jan 5 12:29:17 GMT 2012

Rank 196 Aligned Residues 287

% Identity 14% Template c3e6gA_

PDB info PDB header:lyase Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein; PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae

Resolution 2.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.																			.																																								.	.
Template Conservation												.	.	.	.	.	.	.	.	.																			.																																								.	.
Template Sequence	A	Y	E	R	C	V	A	A	L	E	G	.	.	.	.	.	.	.	.	.	G	T	R	A	F	A	F	A	S	G	M	A	A	T	S	T	V	M	.	E	L	L	D	A	G	S	H	V	V	A	M	D	D	L	Y	G	G	T	F	R	L	F	E	R	V	R	R	R	T	A	G	L	D	F	S	F	V	D	.	.
Template Known Secondary structure											T	.	.	.	.	.	.	.	.	.		S						S	S										.	T	T	S		T	T							S	S																										.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.																			.																																								.	.
Template SS confidence
	68	.	70	.	.	.	.	.	.	.	.										.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.

	158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V
Query Conservation
Alig confidence																																	.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.																													.	.	.	.	.	.	.	.	.
Template Sequence	L	T	D	P	A	A	F	K	A	A	I	R	A	D	T	K	M	V	W	I	E	T	P	T	N	P	M	L	K	L	V	D	.	.	.	I	A	A	I	A	V	I	A	R	K	H	G	L	L	T	V	V	D	N	T	F	A	S	P	M	L	Q	R	.	.	.	.	.	.	.	.	.	P	L	S	L	G	A	D	L
Template Known Secondary structure	T	T											T	T								S	S		T	T	T						.	.	.											T	T								S	S	S		T	T	T			.	.	.	.	.	.	.	.	.	G	G	G	G	T		S
Template Predicted Secondary structure																																	.	.	.																													.	.	.	.	.	.	.	.	.
Template SS confidence
	136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.										.	.	.	.	200	.	.	.

	238	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence	E	F	F	T	L	S	K	S	Y	N	M	A	G	.	.	.	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L
Query Conservation														.	.	.
Alig confidence														.	.	.
Template Conservation
Template Sequence	V	V	H	S	A	T	K	Y	L	N	G	H	S	D	M	V	G	G	I	A	V	V	G	D	N	A	E	L	A	E	Q	M	A	F	L	Q	N	S	I	G	G	V	Q	G	P	F	D	S	F	L	A	L	R	G	L	K	T	L	P	L	R	M	R	A	H	C	E	N	A	L	A	L	A	Q	W	L	E	T	H	P
Template Known Secondary structure					T	T	T	T	T	T		S	S	S										S																		B														T	T																					T		T
Template Predicted Secondary structure
Template SS confidence
	204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

	315	.	.	.	.	320	.															.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	H	E	A	G	W	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.
Template Sequence	A	I	E	K	V	I	Y	P	G	L	A	S	H	P	Q	H	V	L	A	K	R	Q	M	S	G	F	G	G	I	V	S	I	V	L	K	G	.	.	.	G	F	D	A	A	K	R	F	C	E	K	T	E	L	F	T	L	A	E	S	L	G	G	V	E	S	L	V	N	H	P	A	V	M	T	H	A	S	I	P	V
Template Known Secondary structure	T							T	T	S	T	T	S	T	T									S	S			S							T	T	.	.	.													S	S	S				S					S	S						T	T	T	T	T	T		S	S
Template Predicted Secondary structure																																					.	.	.
Template SS confidence
	284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

						365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure	.	.	.	.	.
Query SS confidence	.	.	.	.	.
Query Sequence	.	.	.	.	.	G	D	Y	G	D	T	H	V	R	F	A	L	I	E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M
Query Conservation	.	.	.	.	.
Alig confidence	.	.	.	.	.															.	.
Template Conservation																				.	.
Template Sequence	A	R	R	E	Q	L	G	I	S	D	A	L	V	R	L	S	V	G	I	.	.	E	D	L	G	D	L	R	G	D	L	E	R	A
Template Known Secondary structure	T	T	T	T	T	S	S			S	S								S	.	.	S										T	T
Template Predicted Secondary structure																				.	.
Template SS confidence
	361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.			380	.	.	.	.	.	.	.	.	.	390	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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