Job Description P77434 Confidence 99.97% Date Thu Jan 5 12:29:17 GMT 2012 Rank 115 Aligned Residues 345 % Identity 13% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.								.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.
Query Sequence		T	A	E	L	K	M	A	A	R	R	R	G	E	D	I	I	D	F	S	M	G	N	P	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	.	.	.	.	.	.	.	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D
Query Conservation																																																		.	.	.	.	.	.	.
Alig confidence																										.																								.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation																										.																																																.	.	.	.	.	.	.
Template Sequence		V	A	R	V	R	G	L	H	P	S	L	G	D	G	W	V	H	F	D	A	P	A	G	M	.	L	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	N	.	.	.	.	.	.	.	A
Template Known Secondary structure								T		T	T	T	T	S	S					B	G	G	G			.																			S	S	S		S	S	S																						T	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.																																																.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.								.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.																.	.	.	.
Query SS confidence																								.	.	.																.	.	.	.
Query Sequence		P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	.	.	.	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	.	.	.	.	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y
Query Conservation																								.	.	.																.	.	.	.
Alig confidence																								.	.	.																.	.	.	.																						.
Template Conservation																																																																			.
Template Sequence		D	P	G	G	V	V	L	G	A	D	R	A	V	L	L	S	L	L	A	E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E	.	T	G	E	L	P	T	W	Q	W	E	S	L	I	S
Template Known Secondary structure			G	G	G					S													T	G	G	G	G	B	T	T							T	T	S		G	G	G	T											B										T	T	.	T					G	G	G
Template Predicted Secondary structure																																																																			.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A
Query Conservation
Alig confidence																				.	.	.																																.	.	.	.	.	.	.	.
Template Conservation																				.	.	.																																.	.	.	.	.	.	.	.
Template Sequence		K	S	T	R	L	V	A	V	N	S	A	S	G	T	L	G	G	V	.	.	.	T	D	L	R	A	M	T	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	R	L	L	D	.	.	.	.	.	.	.	.	I	R	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	G	P	P
Template Known Secondary structure		T	T								S	B		T	T	T		B	B	.	.	.													T	T								T	T	T	T	T	T					.	.	.	.	.	.	.	.							S						G	G	G	G	T	S		S
Template Predicted Secondary structure																				.	.	.																																.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.									.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.										.	.	.	.	280	.	.	.	.	.	.	.	.	.	290																.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	.	.	.	.	.	.	.	.	.	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R
Query Conservation																												.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.																								.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.
Template Sequence		I	.	.	G	A	M	V	F	R	D	P	S	V	M	N	S	F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R
Template Known Secondary structure			.	.						S							T	S					S		T	T			G	G	G	G	G			S																			T	S	S	T	T			S	S
Template Predicted Secondary structure			.	.
Template SS confidence
		225			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		306	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.								.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure													.																																																	.	.	.	.	.	.	.
Query SS confidence													.																																																	.	.	.	.	.	.	.
Query Sequence		R	R	D	V	L	V	K	G	L	H	E	.	A	G	W	M	V	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	.	.	.	.	.	.	.	G	D	Y	G	D	T	H	V	R	F	A	L	I
Query Conservation													.																																																	.	.	.	.	.	.	.
Alig confidence													.																			.	.															.														.	.	.	.	.	.	.
Template Conservation																																.	.															.
Template Sequence		V	F	D	Y	L	M	V	S	L	R	S	L	P	L	V	M	L	I	G	R	P	E	A	Q	I	P	V	V	S	F	.	.	A	V	H	K	V	P	A	D	R	V	V	Q	R	L	.	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T	V	G	L	A
Template Known Secondary structure												T		T	T								S	S	B		S					.	.			T	T	B										.			T	T								S								T	T	T	T	T	T
Template Predicted Secondary structure																																.	.															.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
				378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		H	Y	S	T	M	A	E	V	D	Q	L	V	R	A	L	A	S	L
Template Known Secondary structure		T	T															T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions