Job Description P77434 Confidence 99.92% Date Thu Jan 5 12:29:17 GMT 2012 Rank 180 Aligned Residues 341 % Identity 15% Template c3bs8A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis Resolution 2.30 Å

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		34	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure													.	.						.
Query SS confidence													.	.						.
Query Sequence		R	G	E	D	I	I	D	F	S	M	G	.	.	N	P	D	G	A	.	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G
Query Conservation													.	.						.
Alig confidence													.	.						.																								.	.	.	.	.																		.	.	.	.
Template Conservation																																												.	.	.	.	.																		.	.	.	.
Template Sequence		D	G	N	E	Y	I	D	Y	V	L	S	W	G	P	L	I	L	G	H	T	N	D	R	V	V	E	S	L	K	K	V	A	E	Y	G	T	S	F	G	A	P	T	.	.	.	.	.	E	V	E	N	E	L	A	K	L	V	I	D	R	V	P	S	V	.	.	.	.	E	I	V	R	M	V	S	S	G	T	E	A
Template Known Secondary structure		T							S	S	G	G	G	T	T		T	T		B	S																S			S	S			.	.	.	.	.														S	T	T		.	.	.	.	S						S
Template Predicted Secondary structure																																												.	.	.	.	.																		.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.						.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.
		111	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.																	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure													.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	H	L	M	L	A	T	L	D	H	.	.	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P
Query Conservation													.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	M	S	A	L	R	L	A	R	G	Y	T	G	R	N	K	I	L	K	F	E	G	C	Y	H	G	H	G	D	S	L	L	I	K	A	G	S	G	V	A	T	L	G	L	P	D	S	P	G	V	P	E	G	I	A	K	N	T	I	T	V	P	Y	N	D	L	E	S	V	K	L	A	F	Q	Q	F	G	E	D	I
Template Known Secondary structure														T									T					S		G	G	G						S	S	S	S		B				S	S	T	T			T	T	S	S	T	T						T	T													G	G	G
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		173	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		K	M	M	I	L	G	F	.	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W
Query Conservation									.
Alig confidence									.																																																						.	.	.	.	.	.										.
Template Conservation																																																															.	.	.	.	.	.										.
Template Sequence		A	G	V	I	V	E	P	V	A	G	N	M	G	V	V	P	P	Q	E	G	F	L	Q	G	L	R	D	I	T	E	Q	Y	G	S	L	L	I	F	D	E	V	M	T	G	F	R	V	D	Y	N	C	A	Q	G	Y	F	G	V	T	P	D	.	.	.	.	.	.	L	T	C	L	G	K	V	I	G	.	G	G	L
Template Known Secondary structure								S	S	B		S	S	S		B				T	T													T								T	T	T	T	T	T	T	S	T	T						T	T				S	.	.	.	.	.	.						G	G	G	G	.	T	T	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.										.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.							.	.	.	.	.	.	.	270	.		.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.																						.
Query SS confidence																				.	.	.																						.
Query Sequence		R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	.	.	.	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	.	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	W	M	V	E	M	P	K	A	S
Query Conservation																				.	.	.																						.
Alig confidence																				.	.	.																						.
Template Conservation
Template Sequence		P	V	G	A	Y	G	G	K	A	E	I	M	E	Q	I	A	P	S	G	P	I	Y	Q	A	G	T	L	S	G	N	P	L	A	M	T	A	G	L	E	T	L	K	Q	L	T	P	D	S	Y	K	N	F	I	K	K	G	D	R	L	E	E	G	I	S	K	A	A	E	A	H	G	I	P	H	T	F	N	R	A	G
Template Known Secondary structure		S												T	T	B	T	T	T	S	S	B					S	S	T	T														T																											T	T									T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340										.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.
Query Sequence		M	Y	V	W	A	K	I	P	E	P	Y	A	A	.	.	.	.	.	.	.	.	.	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	D	T	H	V	R	F	A	L	I	E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M	F	R	A
Query Conservation															.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.
Template Sequence		S	M	I	G	F	F	F	T	N	E	P	V	I	N	Y	E	T	A	K	A	S	D	L	K	L	F	A	S	Y	Y	K	G	M	A	N	E	G	V	F	L	P	P	S	.	.	.	.	.	.	Q	F	E	G	L	F	L	S	T	A	H	T	D	E	D	I	E	N	T	I	Q	A	A	E	K	V	F	A	E
Template Known Secondary structure		T						S	S	S	S				S					T	T	S															T	T					S	S	.	.	.	.	.	.	S	S	S		B				T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.							.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions