Job Description P77434 Confidence 99.94% Date Thu Jan 5 12:29:17 GMT 2012 Rank 153 Aligned Residues 332 % Identity 14% Template c3bcxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase Resolution 2.40 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	G	E	D	I	I	D	F	S	M	G	N	P	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A
Query Conservation
Alig confidence											.	.						.	.																.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation											.	.						.	.																.	.	.																					.	.	.	.	.	.	.	.	.
Template Sequence		E	A	G	K	S	V	V	P	P	.	.	S	G	K	V	I	.	.	G	T	K	E	L	Q	L	M	V	E	A	S	L	D	G	.	.	.	W	L	T	T	G	R	F	N	D	A	F	E	K	K	L	G	E	Y	L	G	.	.	.	.	.	.	.	.	.	V	P	Y	V	L	T	T	T	S	G	S	S	A	N	L
Template Known Secondary structure			T	T	T	S		B		S	.	.						.	.															T	.	.	.			B	S																T	.	.	.	.	.	.	.	.	.		S						S
Template Predicted Secondary structure											.	.						.	.																.	.	.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.			.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.										.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		113	.	.	.	.	.										.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.
Query Sequence		H	L	M	L	A	T	.	.	.	.	.	.	.	.	.	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P
Query Conservation								.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.																																			.																										.	.	.
Template Conservation																																																			.																										.	.	.
Template Sequence		L	A	L	T	A	L	T	S	P	K	L	G	V	R	A	L	K	P	G	D	E	V	I	T	V	A	A	G	F	P	T	T	V	N	P	T	I	Q	N	G	L	I	P	V	F	V	D	V	D	.	I	P	T	Y	N	V	N	A	S	L	I	E	A	A	V	S	D	K	T	K	A	I	M	I	A	.	.	.	H	T
Template Known Secondary structure							T	T		G	G	G	G	G	G	S			T	T							S	S	S											T	T								B		.	T	T	T		S	B		G	G	G							S	S								.	.	.		G
Template Predicted Secondary structure																																																			.																										.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V
Query Conservation
Alig confidence								.	.	.																																				.	.	.	.	.																.
Template Conservation								.	.	.																																				.	.	.	.	.																.
Template Sequence		L	G	N	L	F	D	.	.	.	L	A	E	V	R	R	V	A	D	K	Y	N	L	W	L	I	E	D	C	C	D	A	L	G	S	T	Y	D	G	K	M	A	G	T	F	.	.	.	.	.	G	D	I	G	T	V	S	F	Y	P	A	H	H	I	T	.	M	G	E	G	G	A	V	F	T	Q	S	A	E	L	K
Template Known Secondary structure		G	G					.	.	.												T								T	T		T	T				T	T			T	T	S	S	.	.	.	.	.	S	S							S	T	T	S	S	S		.		S	S							S
Template Predicted Secondary structure								.	.	.																																				.	.	.	.	.																.
Template SS confidence
		168	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.						.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.																					.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Query Sequence		S	A	L	A	R	I	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	.	A	G	W	M	V	E
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Template Conservation
Template Sequence		S	I	I	E	S	F	R	D	W	G	R	D	C	Y	C	L	G	S	L	P	F	G	Y	D	H	K	Y	T	Y	S	H	L	G	Y	N	L	K	I	T	D	M	Q	A	A	C	G	L	A	Q	L	E	R	I	E	E	F	V	E	K	R	K	A	N	F	K	Y	L	K	D	A	L	Q	S	C	A	D	F	I	E	L
Template Known Secondary structure									B	T	T	B										T	T			G	G	G		B		S				B				B																																G	G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		323	.						.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.																							.	.	370	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	P	.	.	.	.	.	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	T	H	V	R	F	A
Query Conservation				.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.																											.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		P	E	A	T	E	N	S	D	P	S	W	F	G	F	P	I	T	L	K	E	D	S	G	V	S	R	I	D	L	V	K	F	L	.	D	E	A	K	V	G	T	R	L	L	F	A	G	N	L	T	R	Q	P	Y	F	H	D	V	K	Y	R	V	V	G	E	L	T	N	T	D	R	I	M	N	Q	T	F	W	I	G
Template Known Secondary structure						T	T						S	S							G	G	G	S	S										.			T	T	B			B			T	T	S	S	G	G	G	S	G	G	G	T	T							S
Template Predicted Secondary structure																																			.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		376	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		L	I	.	.	E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M	F
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		I	Y	P	G	L	T	H	D	H	L	D	Y	V	V	S	K	F	E	E	F	F
Template Known Secondary structure			S	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions