Job Description P77434 Confidence 99.93% Date Thu Jan 5 12:29:17 GMT 2012 Rank 178 Aligned Residues 335 % Identity 15% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.																											.	.	.
Query SS confidence																												.	.	.	.																											.	.	.
Query Sequence		E	L	K	M	A	A	R	R	R	G	E	D	I	I	D	F	S	M	G	N	P	D	G	A	T	P	.	.	.	.	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	.	.	.	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E
Query Conservation																												.	.	.	.																											.	.	.
Alig confidence																												.	.	.	.																							.				.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation																																																						.																		.	.	.	.	.	.	.	.	.
Template Sequence		D	I	T	T	T	L	L	H	P	K	G	D	H	V	L	H	S	H	A	Y	P	I	F	Q	T	S	T	F	C	F	D	S	T	Q	Q	G	A	D	L	F	M	G	K	G	E	G	H	I	Y	S	R	L	.	G	N	P	T	V	E	Q	F	E	E	M	V	C	S	I	E	G	.	.	.	.	.	.	.	.	.	A
Template Known Secondary structure									S		S	S			S	T	T		S	S							S	B				S	S									T	T		S	S			S	B	T	T	T	.																	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		1505	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.		.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.										.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	.	.	.	.	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P	K	M
Query Conservation																																						.	.	.	.
Alig confidence																																						.	.	.	.																				.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.
Template Sequence		A	G	S	A	A	F	G	S	G	M	G	A	I	S	S	S	T	L	A	F	L	Q	K	G	D	H	L	I	A	G	D	T	L	Y	G	C	T	V	S	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	T	S	D	.	.	.	.	.	.	.	V	E	K	V	K	A	A	W	K	P	N	T	K	M
Template Known Secondary structure		S						S	S										T	T	T			T	T							S	S																T	T								T	T	S	.	.	.	.	.	.	.										T	T
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.
Template SS confidence
		1575	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.								.	.	.	.	.	.	1640	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G
Query Conservation
Alig confidence																	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.																														.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	L	E	S	P	A	N	P	T	C	K	V	S	D	.	.	.	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F	T	S	P	C	F	L	K	P	.	.	.	.	.	.	.	.	.	L	E	L	G	A	D	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G
Template Known Secondary structure						S	S		T	T	T						.	.	.												T								T	T	T		T	T	T			G	.	.	.	.	.	.	.	.	.	G	G	G	T		S						T	T	T	T	T	T		S	S	S
Template Predicted Secondary structure																	.	.	.																														.	.	.	.	.	.	.	.	.
Template SS confidence
		1648	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.				.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.										.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.
		255	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure						.	.																																																																		.	.	.	.	.	.	.	.	.
Query SS confidence						.	.																																																																		.	.	.	.	.	.	.	.	.
Query Sequence		F	M	V	G	.	.	N	K	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	W	M	V	E	M	.	.	.	.	.	.	.	.	.
Query Conservation						.	.																																																																		.	.	.	.	.	.	.	.	.
Alig confidence						.	.																																																																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	S	S	A	K	T	A	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	M	A	P	M	D	A	F	L	C	A	R	G	M	K	T	L	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H	P	G	L	E	S	F	P	G	H	D	I
Template Known Secondary structure							S	S																															T	T																					T		T	T							T	T	S	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		1716	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.
							324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.																						.	370	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	H	V	R	F	A	L	I
Query Conservation		.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.												.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	.	.	.	.	K	S	F	E	A	A	K	K	L	M	E	H	L	K	V	C	T	L	A	V	S	L	G	C	V	D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G	I	T	P	E	L	V	R	I	S	V	G
Template Known Secondary structure							S	S			S							.	.	.	.	S	S									T	S		S	S	S				S					S	S						T	T	T	T	T	T	T	T	S									T			T	T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		1796	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.					.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M	F	R
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		I	.	.	E	N	V	D	D	I	I	A	D	L	K	Q	A	L	E
Template Known Secondary structure		S	.	.	S
Template Predicted Secondary structure			.	.
Template SS confidence
		1872			.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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