Job Description P77434 Confidence 99.90% Date Thu Jan 5 12:29:17 GMT 2012 Rank 195 Aligned Residues 347 % Identity 14% Template c3a8uX_ PDB info PDB header:transferase Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase; PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase Resolution 1.40 Å

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		33	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.							.
Query SS confidence														.	.							.
Query Sequence		R	R	G	E	D	I	I	D	F	S	M	G	.	.	N	P	D	G	A	T	.	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E
Query Conservation														.	.							.
Alig confidence														.	.							.															.	.																														.	.	.
Template Conservation																																					.	.																														.	.	.
Template Sequence		D	K	G	R	K	V	Y	D	S	L	S	G	L	W	T	C	G	A	G	H	T	R	K	E	I	Q	E	A	V	A	K	Q	L	S	T	.	.	L	D	Y	S	P	G	F	Q	Y	G	H	P	L	S	F	Q	L	A	E	K	I	T	D	L	T	P	G	N	L	.	.	.	N	H	V	F	F	T	D	S	G	S	E
Template Known Secondary structure		T	T							T	T					T		T	T		B	S												T	T	T	.	.		S				S	S	S															T	T	S	S	T	T		.	.	.							S	S
Template Predicted Secondary structure																																					.	.																														.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.
		110	.	.	.	.	.	.	.	.									.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.														.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure											.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		G	L	A	H	L	M	L	A	T	.	.	.	.	.	.	.	.	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	.	.	.	.	.	.	.	.
Query Conservation											.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	A	L	T	A	V	K	M	V	R	A	Y	W	R	L	K	G	Q	A	T	K	T	K	M	I	G	R	A	R	G	Y	H	G	V	N	I	A	G	T	S	L	G	G	V	N	G	N	R	K	L	F	G	Q	P	M	Q	D	V	D	H	L	P	H	T	L	L	A	S	N	A	Y	S	R	G	M	P	K	E	G	G
Template Known Secondary structure																	T	T		T	T								T	T					S	S														T	T	T				S		S										G	G	G	T	T		S	S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
									161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																										.
Query SS confidence		.	.	.	.	.	.	.																										.
Query Sequence		.	.	.	.	.	.	.	L	E	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	.	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A
Query Conservation		.	.	.	.	.	.	.																										.
Alig confidence		.	.	.	.	.	.	.																										.																																					.	.
Template Conservation																																																																							.	.
Template Sequence		I	A	L	A	D	E	L	L	K	L	I	E	L	H	D	A	S	N	I	A	A	V	F	V	E	P	L	A	G	S	A	G	V	L	V	P	P	E	G	Y	L	K	R	N	R	E	I	C	N	Q	H	N	I	L	L	V	F	D	E	V	I	T	G	F	G	R	T	G	S	.	.	M	F	G	A	D	S	F	G	V
Template Known Secondary structure																	G	G	G								S	S	B	T	T	T	T		B				T	T													T								T	T	T	T	T	T	T	T	S	S	.	.	S	S						T
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.										270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	.	.	.	.	.	.	.	.	.	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	.	.	G	D	Q	Q	C	V	R	D	I	A	E
Query Conservation																																							.	.	.	.	.	.	.	.	.																						.	.
Alig confidence							.	.	.																														.	.	.	.	.	.	.	.	.																						.	.
Template Conservation							.	.	.
Template Sequence		T	P	D	L	M	.	.	.	C	I	A	K	Q	V	T	N	G	A	I	P	M	G	A	V	I	A	S	T	E	I	Y	Q	T	F	M	N	Q	P	T	P	E	Y	A	V	E	F	P	H	G	Y	T	Y	S	A	H	P	V	A	C	A	A	G	L	A	A	L	C	L	L	Q	K	E	N	L	V	Q	S	V	A	E
Template Known Secondary structure				S			.	.	.				G	G	G	G	T	T	S	S																	T		S	S		T	T	S		S	S					T	T	T	T																		T	T
Template Predicted Secondary structure							.	.	.
Template SS confidence
		280	.	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	W	M	V	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	D	T	H	V	R	F	A	L	I	.	.	E	N
Query Conservation																																																																														.	.
Alig confidence																																																															.	.	.	.	.	.	.									.	.
Template Conservation																																																															.	.	.	.	.	.	.
Template Sequence		V	A	P	H	F	E	K	A	L	H	G	I	K	G	A	K	N	V	I	D	I	R	N	F	G	L	A	G	A	I	Q	I	A	P	R	D	G	D	A	I	V	R	P	F	E	A	G	M	A	L	W	K	A	G	F	Y	V	R	F	G	G	.	.	.	.	.	.	.	D	T	L	Q	F	G	P	T	F	N	S	K
Template Known Secondary structure												T	T	T	T	S	T	T								T	T									B	T	T	B	S	S														T							T	.	.	.	.	.	.	.	T								T	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.								.	.	420	.	.	.	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	R	I	R	Q	A	I	R	G	I	K	A	M	F	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Q	D	L	D	R	L	F	D	A	V	G	E	V	L	N	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions