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Job DescriptionP77434
Confidence100.00%DateThu Jan 5 12:29:17 GMT 2012
Rank42Aligned Residues381
% Identity17%Templatec2x5fB_
PDB info PDB header:transferaseChain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5' PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30. ........40.........50.........60... ......70..
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Query Sequence  PERRFTRIDRLPPYVFNITAELKMAA. . . . . . . . . . RRRGEDIIDFSMGNPDGATPPHIVEKLCTVAQ. . . RPDTHGYST
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Template Sequence  AQSLNEQLQQSNATAFAMLSDLGQNMFYPKGILSQSAEAKSTTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAP
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TTTSSS



SS
TT


TT
SS

GGGTSS


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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   73......80.........90. ........100.........110.........120.........130.........140.........150.
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Query Sequence  SRGIPRLRRAISRWYQDRY. DVEIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPL
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Template Sequence  PQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYP
Template Known Secondary structure  TT


TT

GGGB


S

TT
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TTTTT


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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   152.......160.........170... ......180.........190.........200.. .......210.........220...
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Query Sequence  VEGVDFFNELERAIRESYPKPK. . . MMILGFPSNPTAQCVELEFFEKVVALAKR. . . . . YDVLVVHDLAYADIVYDGWKA
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Template Sequence  IFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYT
Template Known Secondary structure 
B
TTS
B
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SS
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TT

TTTT
B
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   165....170.........180.........190.........200.........210.........220.........230.........240....
 
   224... ..230.........240.........250......... 260.........270.........280.........290..
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Query Sequence  PSIM. . . . QVPGARDVAVEFFTLSKSYNMAGWRIGFMVGN. . . . . . . KTLVSALARIKSYHDYGTFTPLQVAAIAALEGD
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Template Sequence  QSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNN
Template Known Secondary structure  S
TT

TTTT
GGG

B


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   245....250.........260.........270.........280.........290.........300.........310.........320....
 
   293... ...300.........310.........320.........330.........340.........350.........360.....
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Query Sequence  QQCV. . . . . . . RDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFG
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Template Sequence  KQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKV. . . . HDVDPEALRKHLIDKYSIGVIALNAT.
Template Known Secondary structure  T
GGGTTT



BSS....SSS
T




SSS.
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   325....330.........340.........350.........360.........370... ......380.........390.........
 
   366...370....... ..380.........390......
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Query Sequence  DYGDTHVRFALI. ENRDRIRQAIRGIKAMFRA
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Template Sequence  . . . . . DIRIAFSCVEKDDIPHVFDSIAKAIDD
Template Known Secondary structure  .....GGGS
GGG
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   400.........410.........420......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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