Job Description P77434 Confidence 99.92% Date Thu Jan 5 12:29:17 GMT 2012 Rank 182 Aligned Residues 313 % Identity 13% Template c2r0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine Resolution 1.90 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.								120	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.
Query Sequence		P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	L	.	.	.	.	.	.	.	D	H	G	D	T
Query Conservation																																																																						.	.	.	.	.	.	.
Alig confidence																	.	.	.																				.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation																	.	.	.																				.	.	.	.	.	.	.	.	.
Template Sequence		D	L	E	Y	K	A	I	Q	S	V	L	D	S	K	M	.	.	.	F	T	M	G	E	Y	V	K	Q	Y	E	T	Q	F	A	K	T	F	G	.	.	.	.	.	.	.	.	.	S	K	Y	A	V	M	V	S	S	G	S	T	A	N	L	L	M	I	A	A	L	F	F	T	K	K	P	R	L	K	K	G	D	E
Template Known Secondary structure															T		.	.	.		B	S																T	.	.	.	.	.	.	.	.	.		S						S													T	T	S	S	S	S		S			T	T
Template Predicted Secondary structure																	.	.	.																				.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.										.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D
Query Conservation
Alig confidence																																	.																														.	.	.	.	.	.
Template Conservation																																	.																														.	.	.	.	.	.
Template Sequence		I	I	V	P	A	V	S	W	S	T	T	Y	Y	P	L	Q	Q	Y	G	L	R	V	K	F	V	D	I	D	I	N	T	.	L	N	I	D	I	E	S	L	K	E	A	V	T	D	S	T	K	A	I	L	T	V	N	L	L	G	N	P	N	.	.	.	.	.	.	N	F	D	E	I	N	K	I	I	G	G	R	D
Template Known Secondary structure						S		S											T	T								B		T	T	T	.		S	B											S	S									B	T	T	B			.	.	.	.	.	.										T	T	S	S
Template Predicted Secondary structure																																	.																														.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140							.	.	.	.	.	.	.	.	.	150	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																							.	.	.	.	.	.	.																																																	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence		I	I	L	L	E	D	N	C	E	S	M	G	A	T	F	N	N	K	C	A	G	.	.	.	.	.	.	.	T	F	G	L	M	G	T	F	S	S	F	Y	S	K	H	I	A	T	M	E	G	G	C	I	V	T	D	D	E	E	I	Y	H	I	L	L	C	I	R	A	H	G	W	T	R	N	L	P	K	K	N	K
Template Known Secondary structure									T	T		T	T				T	T			T	T	.	.	.	.	.	.	.	S	S	S	S								T	T	S	S	S		S	S	S							S												T	B	T	T	B	S	T	T	S		S	B		S
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.								.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
																										281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	.	.	.	W	M	V	E	M	P	K	A	S	M	Y	V	W	A	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Template Conservation
Template Sequence		V	T	G	V	K	S	D	D	Q	F	E	E	S	F	K	F	V	L	P	G	Y	N	V	R	P	L	E	M	S	G	A	I	G	I	E	Q	L	K	K	L	P	R	F	I	S	V	R	R	K	N	A	E	Y	F	L	D	K	F	K	D	H	P	Y	L	D	V	Q	Q	E	T	G	E	S	S	W	F	G	F	S	F
Template Known Secondary structure		S	S	S	B			S						T	T		B		S				B				B																																	T	T		S	S								S	B
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.																								.	370	.	.	.	.	.	.			.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	H	V	R	F	A	L	.	.	I	E	N	R	D	R	I	R	Q	A	I	R
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence																			.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation																			.
Template Sequence		I	I	K	K	D	S	G	V	I	R	K	Q	L	V	E	N	L	.	N	S	A	G	I	E	C	R	P	I	V	T	G	N	F	L	K	N	T	D	V	L	K	Y	F	D	Y	T	V	H	N	N	V	D	N	A	E	Y	L	D	K	N	G	L	F	V	G	N	H	Q	I	E	L	F	D	E	I	D	Y	L	R	E
Template Known Secondary structure					T	T	S												.			T	T	B			B		S	T	T	S		G	G	G						T	T							S																			S	S
Template Predicted Secondary structure																			.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		389	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	K
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		386	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions