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Job DescriptionP77434
Confidence99.86%DateThu Jan 5 12:29:17 GMT 2012
Rank209Aligned Residues338
% Identity12%Templatec2okkA_
PDB info PDB header:lyaseChain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65)
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   46...50.........60.........70.........80.........90.........100.........110.......
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Query Sequence  PDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLA. . . . . . . .
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Template Sequence  STGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVTLKKMREIIGWPGGS. GDGIFSPGGAISNMYAMMIARFKMFPE
Template Known Secondary structure  S






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TTT
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   183......190.........200.........210.........220.........230.... .....240.........250.........260.
 
   118.120.........130.........140.... .....150.........160.........170.. .......180..
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Query Sequence  . . . . . . TLDHGDTVLVPNPSYPIHIYGAVIAGA. . . QVRSVPLVEGVDFFNELERAIRESYPKP. . . . . . KMMILGFPSN
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Template Sequence  VKEKGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGK. . MIPSDLERRILEAKQKGFVPFLVSATAGTT
Template Known Secondary structure 
GGGS

TTS
TTTS
GGG
B
TTS
..B
TT
BS
T
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   262.......270.........280.........290.........300......... 310.........320.........330.........
 
   183......190.........200.........210.........220.........230.........240.........250.........260..
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Query Sequence  PTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTL
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Template Sequence  VYGAF. . . DPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSGVERANSV. . TWNPHM. MGVPLQCSALLVREEGL
Template Known Secondary structure  TT

B...

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TTGGGGGG
TTTGGGGTTGGG
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   340.... .....350.........360.........370.........380.........390 ...... ...400.........410...
 
   263..... .270.........280.........290.........300.........310....... ..320.. .......330
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Query Sequence  VSALAR. . . . . . . . IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEA. GWMVE. . . MPKASMYV
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Template Sequence  MQNCNQMHDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQHTNVC
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   415....420.........430.........440.........450.........460.........470.........480.........490....
 
   331........340... ......350.........360.........370....... ..380.........390...
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Query Sequence  WAKIPEPYAAMGS. . . . . . . . LEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI. . . ENRDRIRQAIRGIKAM
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Template Sequence  FWYIPPSLRTLEERMSRLSKVAPVIKARMMEYGTTMVSYQPLGDK. VNFFRMVISNPAATHQDIDFLIEEIERL
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TTTTT



TTTS
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   506...510.........520.........530.........540.........550 .........560.........570........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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