Phyre 2 alignment of P77434 with c2ogeC

Job Description P77434
Confidence 99.95% Date Thu Jan 5 12:29:17 GMT 2012

Rank 144 Aligned Residues 334

% Identity 13% Template c2ogeC_

PDB info PDB header:transferase Chain: C: PDB Molecule:transaminase; PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form

Resolution 2.05 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	G	E	D	I	I	D	F	S	M	G	N	P	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H
Query Conservation
Alig confidence														.	.																		.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation														.	.																		.	.	.																					.	.	.	.	.	.	.	.	.
Template Sequence	P	R	V	P	F	L	D	L	K	A	A	Y	E	.	.	E	L	R	A	E	T	D	A	A	I	A	R	V	L	D	S	G	.	.	.	R	Y	L	L	G	P	E	L	E	G	F	E	A	E	F	A	A	Y	C	E	.	.	.	.	.	.	.	.	.	T	D	H	A	V	G	V	N	S	G	M	D	A	L	Q	L
Template Known Secondary structure			B		S									.	.		T															T	.	.	.			S	S	S														T	T	.	.	.	.	.	.	.	.	.	S	S						S
Template Predicted Secondary structure														.	.																		.	.	.																					.	.	.	.	.	.	.	.	.
Template SS confidence
	8	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.										.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.

	114	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence	L	M	L	A	T	.	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F
Query Conservation						.
Alig confidence						.																																										.	.	.	.																											.	.	.
Template Conservation																																																.	.	.	.																											.	.	.
Template Sequence	A	L	R	G	L	G	I	G	P	G	D	E	V	I	V	P	S	H	T	Y	I	A	S	W	L	A	V	S	A	T	G	A	T	P	V	P	V	E	P	H	E	D	H	P	T	L	D	.	.	.	.	P	L	L	V	E	K	A	I	T	P	R	T	R	A	L	L	P	V	H	L	Y	G	H	P	A	D	.	.	.
Template Known Secondary structure					T	T			T	T							S	S	S										T	T	T								B		S	S	S	S	S	B		.	.	.	.					G	G	G			S	S							B		G	G	G					.	.	.
Template Predicted Secondary structure																																																.	.	.	.																											.	.	.
Template SS confidence
	74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.

	193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K	S	Y
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.
Template Sequence	M	D	A	L	R	E	L	A	D	R	H	G	L	H	I	V	E	D	A	A	Q	A	H	G	A	R	Y	R	G	R	R	I	G	.	.	.	.	.	.	.	A	G	S	S	V	A	A	F	S	F	Y	P	G	N	L	G	C	F	G	D	G	G	A	V	V	T	G	D	P	E	L	A	E	R	L	R	M	L	R	N
Template Known Secondary structure											T	T								T	T		T	T				T	T			T	T	.	.	.	.	.	.	.		T	T															S	S								S												T	B
Template Predicted Secondary structure																																		.	.	.	.	.	.	.
Template SS confidence
	147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.								180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

	273										.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence	H	.	.	.	.	.	.	.	.	.	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	W	M	V	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Y	G	S	R	Q	K	Y	S	H	E	T	K	G	T	N	S	R	L	D	E	M	Q	A	A	V	L	R	I	R	L	A	H	L	D	S	W	N	G	R	R	S	A	L	A	A	E	Y	L	S	G	L	A	G	L	P	G	I	G	L	P	V	T	A	P	D	T	D	P	V	W	H	L	F	T	V	R	T	E	R	R
Template Known Secondary structure	T	T		S	B	T	T	B		S	S				B																	T																			T	T	T		T	T	S	B						T	T						S							T	T
Template Predicted Secondary structure
Template SS confidence
	221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

	344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370																						.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Query Sequence	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	R	F	A	L	I	.	.	E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M	F	R	A
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Alig confidence								.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation								.
Template Sequence	D	E	L	R	S	H	L	.	D	A	R	G	I	D	T	L	T	H	Y	P	V	P	V	H	L	S	P	A	Y	A	G	E	A	P	P	E	G	S	L	P	R	A	E	S	F	A	R	Q	V	L	S	L	P	I	G	P	H	L	E	R	P	Q	A	L	R	V	I	D	A	V	R	E	W	A	E	R
Template Known Secondary structure								.			T	T	B			B		S		S	S		G	G	G	S	G	G	G	T	T	T	S			T	T	S																	S	T	T
Template Predicted Secondary structure								.
Template SS confidence
	301	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions