Job Description P77434 Confidence 99.95% Date Thu Jan 5 12:29:17 GMT 2012 Rank 139 Aligned Residues 348 % Identity 13% Template c2hdyA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:selenocysteine lyase; PDBTitle: structure of human selenocysteine lyase Resolution 2.10 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		E	D	I	I	D	F	S	M	G	N	P	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	.	.	.	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A
Query Conservation																																	.	.	.
Alig confidence														.																			.	.	.																													.	.	.
Template Conservation														.																																																		.	.	.
Template Sequence		E	R	K	V	Y	M	D	Y	N	A	T	T	.	P	L	E	P	E	V	I	Q	A	M	T	K	A	M	W	E	A	W	G	N	P	S	S	P	Y	S	A	G	R	K	A	K	D	I	I	N	A	A	R	E	S	L	A	K	M	I	G	G	K	.	.	.	P	Q	D	I	I	F	T	S	G	G	T	E	S	N	N
Template Known Secondary structure								B	T	T	T			.																	S		S		T	T		S	S																						T			.	.	.	G	G	G					S
Template Predicted Secondary structure														.																																																		.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		113	.	.	.	.	.									.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140					.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure								.	.	.	.	.	.	.	.																							.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.																							.	.	.	.
Query Sequence		H	L	M	L	A	T	.	.	.	.	.	.	.	.	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	.	.	.	.	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P
Query Conservation								.	.	.	.	.	.	.	.																							.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.																							.	.	.	.																.
Template Conservation																																																									.
Template Sequence		L	V	I	H	S	V	V	K	H	F	H	A	N	Q	T	G	A	K	P	H	F	I	T	S	S	V	E	H	D	S	I	R	L	P	L	E	H	L	V	E	E	Q	V	A	A	V	T	F	V	P	V	S	K	V	S	.	G	Q	T	E	V	D	D	I	L	A	A	V	R	P	T	T	R	L	V	T	I	M	L	A
Template Known Secondary structure																										T	T															T	T	S										T	T	T	.	S	S									T			T	T								S	B
Template Predicted Secondary structure																																																									.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K
Query Conservation
Alig confidence											.	.	.
Template Conservation											.	.	.
Template Sequence		N	N	E	T	G	I	V	M	P	.	.	.	V	P	E	I	S	Q	R	I	K	A	L	N	Q	E	R	V	A	A	G	L	P	P	I	L	V	H	T	D	A	A	Q	A	L	G	K	Q	R	V	D	V	E	D	L	G	V	D	F	L	T	I	V	G	H	K	F	Y	G	P	R	I	G	A	L	Y	I	R	G	L
Template Known Secondary structure			T	T	T		B	B			.	.	.																		T	T											T	T	T	T	T	T	S										S						G	G	G	T	T	S		S							T	T	B
Template Predicted Secondary structure											.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		261	.	.	.	.	.	.								.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.										.	.	320	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.
Query Sequence		T	L	V	S	A	L	A	.	.	.	.	.	.	.	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	.	.	.	.	.	.	.	.	.	G	W	M	V	E	M	P
Query Conservation									.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	F	T	P	L	Y	P	M	L	F	G	G	G	Q	E	R	N	F	R	P	G	T	E	N	T	P	M	I	A	G	L	G	K	A	A	E	L	V	T	Q	N	C	E	A	Y	E	A	H	M	R	D	V	R	D	Y	L	E	E	R	L	E	A	E	F	G	Q	K	R	I	H	L	N	S	Q	F	P	G	T	Q
Template Known Secondary structure		T	T	T	B					S			S	S		G	G	G	G	T	S		S																																													G	G	G				S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.																			.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Query Sequence		K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	H	V	R	F	A	L	I	.	.	E	N	R	D	R	I	R
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Alig confidence												.	.	.	.													.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation												.	.	.	.													.
Template Sequence		R	L	P	N	T	C	N	F	S	I	.	.	.	.	R	G	P	R	L	Q	G	H	V	V	L	A	.	Q	C	R	V	L	M	A	S	V	G	A	A	C	H	S	D	H	G	D	Q	P	S	P	V	L	L	S	Y	G	V	P	F	D	V	A	R	N	A	L	R	L	S	V	G	R	S	T	T	R	A	E	V	D
Template Known Secondary structure		B		S	S							.	.	.	.			T	T									.			S	S				B	S	S	S	S			S	S		S	S									T	T								T								S	S
Template Predicted Secondary structure												.	.	.	.													.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.					.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	I	R	G	I	K	A	M	F	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	V	Q	D	L	K	Q	A	V	A	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions