Job Description P77434 Confidence 99.93% Date Thu Jan 5 12:29:17 GMT 2012 Rank 170 Aligned Residues 335 % Identity 16% Template c2e7uA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from2 thermus thermophilus hb8 Resolution 1.90 Å

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		33	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.						.
Query SS confidence														.	.						.
Query Sequence		R	R	G	E	D	I	I	D	F	S	M	G	.	.	N	P	D	G	A	.	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E
Query Conservation														.	.						.
Alig confidence														.	.						.																								.	.	.	.	.																		.	.	.	.
Template Conservation																																													.	.	.	.	.																		.	.	.	.
Template Sequence		A	D	G	N	R	Y	L	D	Y	V	M	S	W	G	P	L	I	L	G	H	A	H	P	K	V	L	A	R	V	R	E	T	L	E	R	G	L	T	F	G	A	P	S	.	.	.	.	.	P	L	E	V	A	L	A	K	K	V	K	R	A	Y	P	F	V	.	.	.	.	D	L	V	R	F	V	N	S	G	T	E
Template Known Secondary structure		T	T							S	S	G	G	G	T	T		T	T		B	T														T		S			S	S			.	.	.	.	.															T	T		.	.	.	.							S	S
Template Predicted Secondary structure																																													.	.	.	.	.																		.	.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.						.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.																					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	A	H	L	M	L	A	T	L	D	.	.	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E
Query Conservation													.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		A	T	M	S	A	L	R	L	A	R	G	Y	T	G	R	P	Y	I	V	K	F	R	G	N	Y	H	G	H	A	D	G	L	L	V	E	A	G	S	G	A	L	T	L	G	V	P	S	S	A	G	V	P	E	E	Y	A	K	L	T	L	V	L	.	.	.	.	E	Y	N	D	P	E	G	L	R	E	V	L	K	R
Template Known Secondary structure																							T	T							G	G	G	S					S	S	S			B				S	S	T	T							T	T					.	.	.	.		T	T
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.					.	.	.	.	.	.	.	.	190	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N
Query Conservation
Alig confidence																																																																			.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.
Template Sequence		R	G	E	E	I	A	A	I	I	F	E	P	V	V	G	N	A	G	V	L	V	P	T	E	D	F	L	K	A	L	H	E	A	K	A	Y	G	V	L	L	I	A	D	E	V	M	T	G	F	R	L	A	F	G	G	A	T	E	L	L	G	L	K	P	D	.	.	.	.	.	.	L	V	T	L	G	K	I	L	G
Template Known Secondary structure			G	G	G								S	S	B		T	T	S		B													G	G	G	G	T								T	T	T	T	T	T	S	S	T	T							T				S	.	.	.	.	.	.						G	G	G	G
Template Predicted Secondary structure																																																																			.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260							.	.	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.
Query Sequence		M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	.	.	.	.	.	.	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	W	M	V
Query Conservation																																.	.	.	.	.	.
Alig confidence		.																														.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	G	G	L	P	A	A	A	Y	A	G	R	R	E	I	M	E	K	V	A	P	L	G	P	V	Y	Q	A	G	T	L	S	G	N	P	L	A	M	A	A	G	L	A	T	L	E	L	L	E	E	N	P	G	Y	Y	A	Y	L	E	D	L	G	A	R	L	E	A	G	L	K	E	V	L	K	E	K	G	L	P	H
Template Known Secondary structure		.	T	T	S	S												T	T	B	T	T	T	S	S	B					T	T		S																			T																								T	T
Template Predicted Secondary structure		.
Template SS confidence
			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.											.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.
Query Sequence		E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	.	.	.	.	.	.	.	.	.	.	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	D	T	H	V	R	F	A	L	I	E	N	R	D	R	I	R	Q	A	I	R	G	I	K
Query Conservation																							.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.												.								.	.	.	.	.	.
Template Conservation																																												.								.	.	.	.	.	.
Template Sequence		T	V	N	R	V	G	S	M	I	T	V	F	F	T	E	G	P	V	V	T	F	Q	D	A	R	R	T	D	T	E	L	F	K	R	F	F	H	G	L	L	D	R	.	G	I	Y	W	P	P	S	.	.	.	.	.	.	N	F	E	A	A	F	L	S	V	A	H	R	E	E	D	V	E	K	T	L	E	A	L	R
Template Known Secondary structure							T	T						S	S	S	S				S					T	T	S														T	T	.	T					S	S	.	.	.	.	.	.	S	S	S						T	T
Template Predicted Secondary structure																																												.								.	.	.	.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.							.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		392	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		422	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions