Job Description P77434 Confidence 99.98% Date Thu Jan 5 12:29:17 GMT 2012 Rank 103 Aligned Residues 357 % Identity 14% Template c2dkjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase Resolution 1.15 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.							.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.
Query Sequence		N	I	T	A	E	L	K	M	A	A	R	R	R	G	E	D	I	I	D	F	S	M	G	N	P	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	.	.	.	.	.	.	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I
Query Conservation																																																										.	.	.	.	.	.
Alig confidence																						.							.																													.	.	.	.	.	.																		.
Template Conservation																						.							.																																																				.
Template Sequence		E	A	L	F	E	L	I	A	L	E	E	K	R	Q	R	E	G	L	E	L	.	I	A	S	E	N	F	.	V	S	K	Q	V	R	E	A	V	G	S	V	L	T	N	K	Y	A	E	G	Y	P	G	A	R	Y	Y	G	G	C	E	V	I	D	R	V	E	S	L	A	I	E	R	A	K	A	L	F	G	A	A	.
Template Known Secondary structure																		S				.		T	T				.										T	S	G	G	G	G							T	T			S	S	S																					T		S	.
Template Predicted Secondary structure																						.							.																																																				.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																													.	.	.																	.
Query SS confidence																																													.	.	.																	.
Query Sequence		D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	.	.	.	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	.	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K
Query Conservation																																													.	.	.																	.
Alig confidence		.	.	.																																									.	.	.																	.
Template Conservation		.	.	.
Template Sequence		.	.	.	W	A	N	V	Q	P	H	S	G	S	Q	A	N	M	A	V	Y	M	A	L	M	E	P	G	D	T	L	M	G	M	D	L	A	A	G	G	H	L	T	H	G	S	R	V	N	F	S	G	K	L	Y	K	V	V	S	Y	G	V	R	P	D	T	E	L	I	D	L	E	E	V	R	R	L	A	L	E	H
Template Known Secondary structure		.	.	.							S	S															T	T								G	G	G	T			G	G	G	T		T	T	S						S									T	T	T		S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W
Query Conservation
Alig confidence																		.	.	.	.																																					.	.	.	.	.																.
Template Conservation																		.	.	.	.																																					.	.	.	.	.																.
Template Sequence		R	P	K	V	I	V	A	G	A	S	A	Y	P	R	F	W	.	.	.	.	D	F	K	A	F	R	E	I	A	D	E	V	G	A	Y	L	V	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	N	P	L	.	.	.	.	.	P	Y	A	H	V	V	T	S	T	T	H	K	T	L	R	.	G	P	R
Template Known Secondary structure				S							S	S			S			.	.	.	.													T								T	T	T						T	T	S	S				T	.	.	.	.	.	T	T		S						S	S	G	G	G		.			S
Template Predicted Secondary structure																		.	.	.	.																																					.	.	.	.	.																.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.						.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.
Predicted Secondary structure																																				.	.																																										.
Query SS confidence																																				.	.																																										.
Query Sequence		R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	.	.	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	W	M	V	E	M	P	K	A	.	S	M
Query Conservation																																				.	.																																										.
Alig confidence																																				.	.																																										.
Template Conservation
Template Sequence		G	G	L	I	L	S	N	D	P	E	L	G	K	R	I	D	K	L	I	F	P	G	I	Q	G	G	P	L	E	H	V	I	A	G	K	A	V	A	F	F	E	A	L	Q	P	E	F	K	E	Y	S	R	L	V	V	E	N	A	K	R	L	A	E	E	L	A	R	R	G	Y	R	I	V	T	G	G	T	D	N	H
Template Known Secondary structure								S													T	T	T	T		S	S																	T	S																							T	T	T				G	G	G	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.					.	370	.	.	.	.	.							.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.								.	.	.	.	.	.
Query SS confidence																																										.	.	.	.								.	.	.	.	.	.
Query Sequence		Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	.	.	.	.	D	T	H	V	R	F	A	.	.	.	.	.	.	L	I	E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M	F	R	A	D
Query Conservation																																										.	.	.	.								.	.	.	.	.	.
Alig confidence										.	.													.																		.	.	.	.								.	.	.	.	.	.
Template Conservation										.	.													.
Template Sequence		L	F	L	V	D	L	R	P	.	.	K	G	L	T	G	K	E	A	E	E	R	L	.	D	A	V	G	I	T	V	N	K	N	A	I	P	F	D	P	K	P	P	R	V	T	S	G	I	R	I	G	T	P	A	I	T	T	R	G	F	T	P	E	E	M	P	L	V	A	E	L	I	D	R	A	L	L	E	G
Template Known Secondary structure								G	G	.	.	G	T											.		T	T	T									T	T			S		T	T	T		S												T	T			G	G	G
Template Predicted Secondary structure										.	.													.
Template SS confidence
		313	.	.	.	.	.	.	320			.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions