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Job DescriptionP37765
Confidence100.00%DateThu Jan 5 11:57:34 GMT 2012
Rank1Aligned Residues236
% Identity31%Templatec3dh3C_
PDB info PDB header:isomerase/rnaChain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELCTR
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Template Sequence  VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD. . VVKVNGQLIEPR. . EAEDLVLIALNKPVGIVSTT
Template Known Secondary structure  TTTSS
TT
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GGG


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   7..10.........20.........30.........40.........50 .........60.. .......70.........80..
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  NDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL
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Template Sequence  EDGE. RDNIVDFVNH. . SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI
Template Known Secondary structure 
SS
.TTBT
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   83... ...90...... ...100.........110.........120.........130.........140.........150.........
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  EDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE
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Template Sequence  LGTVTKKCKVKK. . . . EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS. GIPLGEWRDLTDDELIDLFK
Template Known Secondary structure  SSSB



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TTTT

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   160.........170. ........180.........190.........200.........210.... .....220.........230....
 
   243......250
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Query Sequence  LVELPPET
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Template Conservation          
Template Sequence  LIENSSSE
Template Known Secondary structure  T



S

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   235....240..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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