Job Description P37765 Confidence 100.00% Date Thu Jan 5 11:57:34 GMT 2012 Rank 11 Aligned Residues 157 % Identity 20% Template c2i82D_ PDB info PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure Resolution 2.05 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	G	H	L	I	S	V	R	E	S	A	E	Q	I	C	R	V	L	A	Y	Y	K	P	E	G	E	L	C	T	R	N	D	P	E	G	R	P	T	V	F	D	R	L	P	K	L	R	G	A	R	W	I	A	V	G	R	L	D	V	N	T	C	G	L	L	L	F	T	T	D	G	E	L	A	N	R	L	M	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	N	P	P	Q	E	P	W	L	V	I	L	Y	Q	D	D	H	I	X	V	V	N	K	P	S	G	L	L	S	V	P	G	R	L	E	E	H	K	D	S	V	X	T	R	I	Q	R	D	Y	P	Q	A	E	S	V	H	R	L	D	X	A	T	S	G	V	I	V	V	A	L	T	K	A	A	E	R	E	L	K	R
Template Known Secondary structure						S	S	S									S	S								T	T	S	B	S	S			S	S	G	G	G			B						T	T	T	S	T	T				S	S				S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		906	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.
		132			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.												.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure			.	.																						.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence			.	.																						.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		P	.	.	S	R	E	V	E	R	E	Y	A	V	R	V	F	G	Q	V	D	D	A	K	L	.	.	.	.	.	.	.	.	.	.	.	R	D	L	S	R	G	V	Q	L	E	D	G	P	A	A	F	K	T	I	K	F	S	G	G	E	G	.	I	N	Q	W	Y	N	V	T	L	T	E	G	R	N	R	E	V	R
Query Conservation			.	.																						.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence			.	.																						.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		Q	F	R	E	R	E	P	K	K	Q	Y	V	A	R	V	W	G	H	P	S	P	A	E	G	L	V	D	L	P	L	I	C	D	W	P	N	R	P	K	Q	K	V	C	Y	E	T	G	K	P	A	Q	T	E	Y	E	V	V	E	Y	A	A	D	N	T	A	R	V	V	L	K	P	I	T	G	R	S	H	Q	L	R
Template Known Secondary structure					T	T		S										S			S	S	S												G	G	G	T	T						T	T	T		B													T	T	T									S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		986	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	W	E	A	V	G	V	Q	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	H	X	L	A	L	G	H	P	I	L
Template Known Secondary structure								T			B	T
Template Predicted Secondary structure
Template SS confidence
		1066	.	.	.	1070	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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