Job Description P37765 Confidence 100.00% Date Thu Jan 5 11:57:34 GMT 2012 Rank 6 Aligned Residues 172 % Identity 30% Template c2gmlA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C	R	V	L	A	Y	Y	K	P	E	G	E	L	C	T	R	N	D	P	E	G	R	P	T	V	F	D	R	L	P	K	L	R	G	A	R	W	I	A	V	G	R	L	D	V	N	T	C	G	L	L	L	F	T	T	D	G	E	L	A	N	R	L	M	H	P	S	R	E	V	E	R	E	Y	A	V	R	V	F
Query Conservation
Alig confidence																						.												.	.
Template Conservation																						.												.	.
Template Sequence		D	L	V	L	I	A	L	N	K	P	V	G	I	V	S	T	T	E	D	G	.	E	R	D	N	I	V	D	F	V	N	H	.	.	S	K	R	V	F	P	I	G	R	L	D	K	D	S	Q	G	L	I	F	L	T	N	H	G	D	L	V	N	K	I	L	R	A	G	N	D	H	E	K	E	Y	L	V	T	V	D
Template Known Secondary structure												T	T		B			S	S	S	S	.		S	S	B					S			.	.	S	S						S				T	T									S															S									S
Template Predicted Secondary structure																						.												.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	V	D	D	A	K	L	R	D	L	S	R	G	V	Q	L	E	D	G	P	A	A	F	K	T	I	K	F	S	G	G	E	G	I	N	Q	W	Y	N	V	T	L	T	E	G	R	N	R	E	V	R	R	L	W	E	A	V	G	V	Q	V	S	R	L	I	R	V	R	Y	G	D	I	P	L	P	K	G	L	P
Query Conservation
Alig confidence																																			.	.	.	.																																								.
Template Conservation																																			.	.	.	.																																								.
Template Sequence		K	P	I	T	E	E	F	I	R	G	X	S	A	G	V	P	I	L	G	T	V	T	K	K	C	K	V	K	K	E	A	P	F	.	.	.	.	V	F	R	I	T	L	V	Q	G	L	N	R	Q	I	R	R	X	C	E	H	F	G	Y	E	V	K	K	L	E	R	T	R	I	X	N	V	S	L	S	.	G	I	P
Template Known Secondary structure		S											S	S					T	T													T	T	.	.	.	.										S	T	T									T	T												T	T				T	.	T
Template Predicted Secondary structure																																			.	.	.	.																																								.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	G	W	T	E	L	D	L	A	Q	T	N	Y	L	R	E	L	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	E	W	R	D	L	T	D	D	E	L	I	D	L	F	K	L	I	E
Template Known Secondary structure		T	T															T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions