Job Description P37765 Confidence 98.76% Date Thu Jan 5 11:57:34 GMT 2012 Rank 26 Aligned Residues 146 % Identity 16% Template c2apoA_ PDB info PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex Resolution 1.95 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		V	L	A	Y	Y	K	P	E	G	E	L	C	T	R	N	D	P	E	G	R	P	T	V	F	D	R	L	P	K	L	R	G	A	R	W	I	A	V	G	R	L	D	V	N	T	C	G	L	L	L	F	T	T	D	G	E	L	A	N	R	L	M	H	P	S	R	E	V	E	R	E	Y	A	V	R	V	F	G	.	.
Query Conservation																																																																																.	.
Alig confidence														.	.	.	.	.	.	.																																					.	.																						.	.
Template Conservation														.	.	.	.	.	.	.																																					.	.
Template Sequence		V	V	V	V	D	K	P	R	G	P	T	S	.	.	.	.	.	.	.	H	E	V	S	T	W	V	K	K	I	L	N	L	D	K	A	G	H	G	G	T	L	D	P	K	V	T	G	V	L	P	V	A	L	E	R	.	.	A	T	K	T	I	P	M	W	H	I	P	P	K	E	Y	V	C	L	M	H	L	H	R
Template Known Secondary structure									S	S	S			.	.	.	.	.	.	.											T	T		S					S	S				T	T										G	G	.	.	G	G	G	G	G	G	G	T	T	S	S											S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.																																					.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.								.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.							.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																																																		.	.	.	.	.	.
Query SS confidence													.	.	.																																																		.	.	.	.	.	.
Query Sequence		Q	V	D	D	A	K	L	R	D	L	S	.	.	.	R	G	V	Q	L	E	D	G	P	A	A	F	K	T	I	K	F	S	G	G	E	G	I	N	Q	W	Y	N	V	T	L	T	E	G	R	N	R	E	V	R	R	L	W	E	A	V	G	V	Q	.	.	.	.	.	.	V	S	R	L	I	R	V	R	Y	G	D
Query Conservation													.	.	.																																																		.	.	.	.	.	.
Alig confidence													.	.	.																																					.	.												.	.	.	.	.	.
Template Conservation																																																				.	.
Template Sequence		D	A	S	E	E	D	I	L	R	V	F	K	E	F	T	G	R	I	Y	Q	R	R	I	R	K	I	H	E	L	E	L	L	D	K	D	G	K	D	V	L	F	R	V	K	C	Q	S	G	T	Y	.	.	I	R	K	L	C	E	D	I	G	E	A	L	G	T	S	A	H	M	Q	E	L	R	R	T	K	S	G	C
Template Known Secondary structure																S																					T	T										T	T			.	.												T	T	S													T	T
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		218	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	L	P	K	G	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	E	K	D	A	V	Y
Template Known Secondary structure				G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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