Job Description P37765 Confidence 100.00% Date Thu Jan 5 11:57:34 GMT 2012 Rank 2 Aligned Residues 227 % Identity 26% Template c1vioA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase Resolution 1.59 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	K	L	Q	K	V	L	A	R	A	G	H	G	S	R	R	E	I	E	S	I	I	E	A	G	R	V	S	V	D	G	K	I	A	K	L	G	D	R	V	E	V	T	P	G	L	K	I	R	I	D	G	H	L	I	S	V	R	E	S	A	E	Q	I	C	R	V	L	A	Y	Y	K	P	E	G	E	L	C	T
Query Conservation
Alig confidence																																											.																.	.	.	.
Template Conservation																																											.																.	.	.	.
Template Sequence		S	L	R	L	D	K	F	I	A	E	N	V	G	L	T	R	S	Q	A	T	K	A	I	R	Q	S	A	V	K	I	N	G	E	I	V	K	S	G	S	V	Q	.	I	S	Q	E	D	E	I	Y	F	E	D	E	L	L	T	.	.	.	.	W	I	E	E	G	Q	Y	F	M	L	N	K	P	Q	G	C	V	C	S
Template Known Secondary structure														T												T	T					T	T						T	T			.			T	T	S					T	T					.	.	.	.	S	S												T	T		B	S	S
Template Predicted Secondary structure																																											.																.	.	.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	D	P	E	G	R	P	T	V	F	D	R	L	P	K	L	R	G	A	R	W	I	A	V	G	R	L	D	V	N	T	C	G	L	L	L	F	T	T	D	G	E	L	A	N	R	L	M	H	P	S	R	E	V	E	R	E	Y	A	V	R	V	F	G	Q	V	D	D	A	K	L	R	D	L	S	R	G	V	Q
Query Conservation
Alig confidence					.	.	.
Template Conservation					.	.	.
Template Sequence		N	D	D	.	.	.	Y	P	T	I	Y	Q	F	F	D	Y	P	L	A	G	K	L	H	S	A	G	R	L	D	V	D	T	T	G	L	V	L	L	T	D	D	G	Q	W	S	H	R	I	T	S	P	K	H	H	C	E	K	T	Y	L	V	T	L	A	D	P	V	E	E	N	Y	S	A	A	C	A	E	G	I	L
Template Known Secondary structure					.	.	.			B	G	G	G	G	S		T	T	G	G	G	G				S	S				T	T									S											T	T	S											S	S				T	T
Template Predicted Secondary structure					.	.	.
Template SS confidence
		75	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		162	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		L	E	D	G	.	.	P	A	A	F	K	T	I	K	F	S	G	G	E	G	I	N	Q	W	Y	N	V	T	L	T	E	G	R	N	R	E	V	R	R	L	W	E	A	V	G	V	Q	V	S	R	L	I	R	V	R	Y	G	D	I	P	L	P	K	G	L	P	R	G	G	W	T	E	L	D	L	A	Q	T	N	Y
Query Conservation						.	.
Alig confidence						.	.													.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		L	R	G	E	K	E	P	T	K	P	A	K	L	E	I	L	D	D	.	.	.	.	Y	N	V	N	L	T	I	S	E	G	R	Y	H	Q	V	K	R	M	F	A	A	L	G	N	K	V	V	G	L	H	R	W	K	I	G	D	V	V	L	D	E	S	L	E	E	G	E	Y	R	P	L	T	Q	S	E	I	E	K
Template Known Secondary structure			T	T		S	S											S	S	.	.	.	.	S							S				T	T									T	T												T	T					T	T			T	T
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		240
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		230

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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