Job Description P37765 Confidence 98.40% Date Thu Jan 5 11:57:34 GMT 2012 Rank 30 Aligned Residues 148 % Identity 19% Template c1sgvA_ PDB info PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) Resolution 1.90 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		V	L	A	Y	Y	K	P	E	G	E	L	C	T	R	N	D	P	E	G	R	P	T	V	F	D	R	L	P	K	L	R	G	A	R	W	I	A	V	G	R	L	D	V	N	T	C	G	L	L	L	F	T	T	D	G	E	L	A	N	R	L	M	H	P	S	R	E	V	E	R	E	Y	A	V	R	V	F	G	.	.
Query Conservation																																																																																.	.
Alig confidence														.	.	.	.	.	.	.																																					.	.																						.	.
Template Conservation														.	.	.	.	.	.	.																																					.	.
Template Sequence		I	V	V	I	D	K	P	A	G	M	T	S	.	.	.	.	.	.	.	H	D	V	V	G	R	C	R	R	I	F	A	T	R	R	V	G	H	A	G	T	L	D	P	M	A	T	G	V	L	V	I	G	I	E	R	.	.	A	T	K	I	L	G	L	L	T	A	A	P	K	S	Y	A	A	T	I	R	L	G	Q
Template Known Secondary structure									T	T				.	.	.	.	.	.	.											T	T		S					S	S				T	T										G	G	.	.	G	G	G	G	G	G	G	T	T	T	S											T
Template Predicted Secondary structure														.	.	.	.	.	.	.																																					.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.								20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
																				147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	D	D	A	K	L	R	D	L	S	R	G	V	Q	L	E	D	G	P	A	A	F	K	T	I	K	.	.	.	.	.	F	S	G	G	E	G	I	N	Q	W	Y	N	V	T	L	T	E	G	R	N	R	E	V	R	R	L	W	E	A	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Conservation
Template Sequence		T	T	S	T	E	D	A	E	G	Q	V	L	Q	S	V	P	A	K	H	L	T	I	E	A	I	D	A	A	M	E	R	L	R	G	E	I	L	E	A	R	P	I	R	I	D	R	F	E	L	L	A	A	R	R	R	D	Q	L	I	D	I	D	V	E	I	D	C	S	S	G	T	Y	I	R	A	L	A	R	D	L
Template Known Secondary structure				T	T	S	B	T	T	S									T	T													T																								T	T											S			T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		204	.	.							.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		G	V	Q	.	.	.	.	.	.	V	S	R	L	I	R	V	R	Y	G	D	I	P	L	P	K	G	L	P
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	A	L	G	V	G	G	H	V	T	A	L	R	R	T	R	V	G	R	F	E	L	D	Q	A	R	S
Template Known Secondary structure						T	S													T	T			G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions