Job Description P37765 Confidence 99.97% Date Thu Jan 5 11:57:34 GMT 2012 Rank 13 Aligned Residues 154 % Identity 18% Template c1qyuA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud Resolution 2.00 Å

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		55	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure								.																																										.	.	.	.	.
Query SS confidence								.																																										.	.	.	.	.
Query Sequence		H	L	I	S	V	R	.	E	S	A	E	Q	I	C	R	V	L	A	Y	Y	K	P	E	G	E	L	C	T	R	N	D	P	E	G	R	P	T	V	F	D	R	L	P	K	L	R	G	A	.	.	.	.	.	R	W	I	A	V	G	R	L	D	V	N	T	C	G	L	L	L	F	T	T	D	G	E	L	A	N	R
Query Conservation								.																																										.	.	.	.	.
Alig confidence								.																																										.	.	.	.	.
Template Conservation
Template Sequence		E	P	Q	D	I	P	L	D	I	V	Y	E	D	E	D	I	I	I	I	N	K	P	R	D	L	V	V	H	P	G	A	G	N	P	D	G	T	V	L	N	A	L	L	H	Y	Y	P	P	I	A	D	V	P	R	A	G	I	V	H	R	L	D	K	D	T	T	G	L	X	V	V	A	K	T	V	P	A	Q	T	R
Template Known Secondary structure															S	S								S	S			S	S		B	T	T	B	S	S	S	S										G	G	G	G	G	S	G	G	G	G	B		S				T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		129			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.										.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure			.	.																									.	.	.	.	.	.	.	.	.
Query SS confidence			.	.																									.	.	.	.	.	.	.	.	.
Query Sequence		L	.	.	M	H	P	S	R	E	V	E	R	E	Y	A	V	R	V	F	G	Q	V	D	D	A	K	L	.	.	.	.	.	.	.	.	.	R	D	L	S	R	G	V	Q	L	E	D	G	P	A	A	F	K	T	I	K	F	S	G	G	E	G	I	N	Q	W	Y	N	V	T	L	T	E	G	R	N	R	E	V	R
Query Conservation			.	.																									.	.	.	.	.	.	.	.	.
Alig confidence			.	.																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	E	S	L	Q	R	R	E	I	T	R	E	Y	E	A	V	A	I	G	H	X	T	A	G	G	T	V	D	E	P	I	S	R	H	P	T	K	R	T	H	X	A	V	H	P	M	G	K	P	A	V	T	H	Y	R	I	X	E	H	F	R	V	H	T	R	L	R	L	R	L	E	T	G	R	T	H	Q	I	R
Template Known Secondary structure								T	T												S																S	S		T	T						T	T	S	B													S	S									S				T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	W	E	A	V	G	V	Q	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	H	X	A	H	I	T	H	P	L	V
Template Known Secondary structure							T	T			B	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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