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Job DescriptionP42592
Confidence99.71%DateThu Jan 5 12:01:39 GMT 2012
Rank15Aligned Residues366
% Identity17%Templated2fbaa1
SCOP infoalpha/alpha toroid Six-hairpin glycosidases Glucoamylase
Resolution1.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   300.........310.........320.........330....... ..340.........350..... ....360.........370
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Query Sequence  PEQTRVAVKAIETLNGNWRSPGGAVKFNTVTPSVTGRW. . . FSGNQTWPWDTWKQAFAM. AHFNPDIAKENIRAV. . . . .
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Template Sequence  DKQKEVSLYYLLQNIAYPEGQFNNGVPGTVIASPSTSNPDYYY. . . QWTRDSAITFLTVLSELEDNNFNTTLAKAVEYYI
Template Known Secondary structure  TBB
TTSSBTTS
TT
B
S
S
BSSSB

S...TTT
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   23......30.........40.........50.........60..... ....70.........80.........90.........
 
   371........380.........390.........400.........410.........420.........430...
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Query Sequence  . . . . . FSWQIQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKT. . . . . . . . . . . .
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Template Sequence  NTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDGSAYTGAWGRP. . QNDGPALRAYAISRYLNDVNSLNEGKLVLTDSGDI
Template Known Secondary structure  TS
BTTB
TTSGGGGGGG


TTS
B

S

S

..BTTSTT

SSTT
TT
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   100.........110.........120.........130.........140.. .......150.........160.........170.......
 
   434.....440.........450.........460.........470.........480.........490.........500.........
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Query Sequence  . . . . WVAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDSL
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Template Sequence  NFSSTEDIYKNIIKPDLEYVIGYWDSTGFDL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S
SSTTTS

T.................................................
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   178.180.........190.........200........
 
   510.........520 .........530.........540.........550.........560.........570.........580.......
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Query Sequence  EIPAQVAASWE. . SGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYL
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Template Sequence  . . . . . . . . . WEENQGRHFFTS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LVQQKALAYA
Template Known Secondary structure  .........TS



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   209210.........220 .........230
 
   588.590.........600.........610....... ..620.........630.........640.........650.........660....
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Query Sequence  AEMATILGKPEEAKRYRQLAQQLADYINTC. . . MFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAAT
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Template Sequence  VDIAKSFDDGDFANTLSSTASTLESYLSGSDGGFVNTDVNHIVENPDLLQQNSRQGLDSATYIGPLLTHDIGESSSTPFD
Template Known Secondary structure  TT
STTT

TTTT
SSTTS

S

TS
TTS



S

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   231........240.........250.........260.........270.........280.........290.........300.........310
 
   665....670.........680.........690..... ....700... ......710.........720........
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Query Sequence  QANADAVVKVMLDPKEFNTFVPLGTAALTNP. . . AFGADIYW. . . . . RGRVWVDQFWFGLKGMERYGYRDDA. . . . . . . .
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Template Sequence  VDNEYVLQSYYLLLEDNKDRYSVNSAYSAGAAIGRYPEDVYNGDGSSEGNPWFLATAYAAQVPYKLAYDAKSASNDITIN
Template Known Secondary structure  TT

GGGTT
SS




S
TT

B
SSSBSS


BT

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   311........320.........330.........340.........350.........360.........370.........380.........390
 
   729730.........740... ......750.........760....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LKLADTFFRHAKGLT. ADGPIQENYNPLTGAQQGAPN
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Template Sequence  KINYDFFNKYIVDLSTINSAYQSSDSVTIKSGSDEFNTVADNLVTFGDSFLQVILDHINDDGSLNEQLNRYTGYSTGAYS
Template Known Secondary structure  GGGT

GGGT
TTGGGSS
TTSS
TTS


S
TTT

SSTT
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   391........400.........410.........420.........430.........440.........450.........460.........470
 
   765....770.......
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Query Sequence  FSWSAAHLYMLYN
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Template Sequence  LTWSSGALLEAIR
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   471........480...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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