Return to main results Retrieve Phyre Job Id

Job DescriptionP42592
Confidence99.97%DateThu Jan 5 12:01:39 GMT 2012
Rank8Aligned Residues350
% Identity16%Templated1lf6a1
SCOP infoalpha/alpha toroid Six-hairpin glycosidases Bacterial glucoamylase C-terminal domain-like
Resolution2.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   297..300.........310....... ..320.... .....330.........340.........350........ .360.....
Predicted Secondary structure 


.

.........























.
Query SS confidence 




















.






. . . . . . . . .

































.






Query Sequence  DATPEQTRVAVKAIETLNGNW. RSPGGAV. . . . . . . . . KFNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHF. NPDIAKE
Query Conservation           
 
    
    .    
  ......... 
    
     

     
 


 
 




  .

  
  
Alig confidence 




















.






.........













.....














.






Template Conservation             

   

        







   

  
     

 
 .....
 

      

   
    
  
Template Sequence  NFNGKANSLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLV. . . . . WSRDLYHVANAFIAAGDVDSANR
Template Known Secondary structure 
TTTT

TTB
SSSTT
B
S
SS
TTGGGS
SSS

GGGSB.....
T
Template Predicted Secondary structure 





























.....


Template SS confidence 















































































   289290.........300.........310.........320.........330.........340 .........350.........360...
 
   366...370.........380.........390.........400.........410.........420.........430.........440.....
Predicted Secondary structure 









































Query SS confidence 















































































Query Sequence  NIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKTWVAEMYPKLVAY
Query Conservation 

  
   
    
     
 
 


 
              
    




 



  

  
 
 









   
Alig confidence 











.........




......















































Template Conservation   
  
   
   .........
  
 ......     
       
 
     
               
      
   
Template Sequence  SLDYLAKVVKDN. . . . . . . . . GMIPQ. . . . . . NTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLVKPLADFIIKI
Template Known Secondary structure  .........SS

S......
B
TTS
B





TT
GGGTTTT
Template Predicted Secondary structure 


.........




......






















Template SS confidence 















































































   364.....370..... ....380 .........390.........400.........410.........420........
 
   446...450.........460.........470.........480.........490.........500.........510.........520.....
Predicted Secondary structure 

























































Query SS confidence 















































































Query Sequence  HDWWLRNRDHNGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDD
Query Conservation    

   

 

 

 


                  
                 
              
  



 

Alig confidence  .......













...........................................................
Template Conservation  .......        


  
...........................................................
Template Sequence  . . . . . . . GPKTGQERWEEIGG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .......
SSBSS
TTSS

B...........................................................
Template Predicted Secondary structure  .......










...........................................................
Template SS confidence 















































































   429430.........440..
 
   526...530.........540.........550.........560.........570.........580.........590.........600.....
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  AAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQ
Query Conservation 
 


                  
         
              




 
      

 

  

    
     
Alig confidence  ..............................................

































Template Conservation  ..............................................    
 
    

   
 

   

   
     
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YSPATMAAEVAGLTCAAYIAEQNKDYESAQKYQE
Template Known Secondary structure  ..............................................B
TT
Template Predicted Secondary structure  ..............................................






Template SS confidence 















































































   443......450.........460.........470......
 
   606...610.........620.........630......... 640.........650.........660.........670....
Predicted Secondary structure 












...........















Query SS confidence 

































. . . . . . . . . . .


































Query Sequence  LAQQLADYINTCMFDPTTQFYYDVRIEDKPLANG. . . . . . . . . . . CAGKPIVERGKGPEGWSPLFNGAATQANADAVVKV
Query Conservation   
  
  

   




 
 
 
  
        ...........                 

  

   
 
  

  
Alig confidence 

































...........



























.





Template Conservation   
  
   
                                               


 
 
   
     
.     
Template Sequence  KADNWQKLIDNLTYTENGPLGNGQYYIRIAGLSDPDADFMINIANGGGVYDQKEIVDPSFLELVRLGVKSADD. PKILNT
Template Known Secondary structure  SS
SSTTS

S
BSSS
TTS

TTTTGGG


GGGGTTSS
TT
.
Template Predicted Secondary structure 




















































.
Template SS confidence 















































































   477..480.........490.........500.........510.........520.........530.........540......... 550.....
 
   675.. ..680.........690 .........700.........710.........720.........730.........740... ..
Predicted Secondary structure 
.








.......




















.
Query SS confidence 


.












. . . . . . .




















































.

Query Sequence  MLD. PKEFNTFVPLGTA. . . . . . . ALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLT. AD
Query Conservation 
 
.   
 
  

 

.......
  

 
 
  






 
 
 
 
 

 


  
 
  

  
      
 .  
Alig confidence 


.












.......














































....

.

Template Conservation     
   
           

  
 
                 
       
         
  

     ....     
Template Sequence  LKVVDSTIKVDTPKGPSWYRYNHDGYGEPSKTELYHGAGKGRLWPLLTGERGMYEIAAGKDATPYVKAMEK. . . . FANEG
Template Known Secondary structure  STT
SSTT


S
SBTTB

SSSS


BBTT


....S
TT
Template Predicted Secondary structure 


































....



Template SS confidence 















































































   556...560.........570.........580.........590.........600.........610.........620...... ...630.
 
   746...750.........760. ........770.........780...
Predicted Secondary structure 










.







Query SS confidence 















.





















Query Sequence  GPIQENYNPLTGAQQG. APNFSWSAAHLYMLYNDFFRKQ
Query Conservation 
   
 


 

 
 
.   






 
 

  
 
  
Alig confidence 















.





















Template Conservation 
 
 
  
   
   
 
 




 
  
     
    
Template Sequence  GIISEQVWEDTGLPTDSASPLNWAHAEYVILFASNIEHK
Template Known Secondary structure  S


S
B
TTT

B
SS
SS
TS
Template Predicted Secondary structure 



















Template SS confidence 






































   632.......640.........650.........660.........670
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions