Job Description P42592 Confidence 8.78% Date Thu Jan 5 12:01:39 GMT 2012 Rank 70 Aligned Residues 104 % Identity 21% Template c2jw1A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:lipoprotein mxim; PDBTitle: structural characterization of the type iii pilotin-2 secretin interaction in shigella flexneri by nmr3 spectroscopy Resolution UNK

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		K	K	V	D	F	T	L	E	A	Y	S	I	P	G	A	L	V	Q	K	L	T	A	K	D	V	Q	V	E	M	T	L	R	F	A	T	P	R	T	S	L	L	E	T	K	I	T	S	N	K	P	L	D	L	V	W	D	G	E	L	L	E	K	L	E	A	K	E	G	K	.	.	P	L	S	D	K	T	I	A	G
Query Conservation																																																																							.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.																																				.	.									.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.																																														.
Template Sequence		H	I	V	P	V	S	K	D	Y	F	S	I	P	N	D	L	L	W	S	F	N	T	.	.	.	.	.	.	.	.	.	.	.	.	T	N	K	S	I	N	V	Y	S	K	C	I	S	G	K	A	V	Y	S	F	N	A	G	K	F	M	G	N	F	N	V	K	E	V	D	G	C	F	M	D	A	Q	K	I	A	.
Template Known Secondary structure							S	G	G	G	T	T			S								T	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T							S	S											T	T												S	B	T	T	B	T						.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.																																														.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.													.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	P	D	Y	Q	R	K	I	S	A	T	R	D	G	L	K	V	T	F	G	K	V	R	A	T	W	D	L	L	T	S	G	E	S	E	Y	Q	V	H	K	S	L
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	I	D	K	L	F	S	M	L	K	D	G	V	V	L	K	G	N	K	I	N	D	T	I	L	I	E	K	D	G	E	V	K	L	K	L	I	R	G	I
Template Known Secondary structure		.	.	.	.												B					S	S		S	S	S						S	S	S						S	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions