Return to main results Retrieve Phyre Job Id

Job DescriptionP37052
Confidence100.00%DateThu Jan 5 11:54:43 GMT 2012
Rank2Aligned Residues124
% Identity35%Templatec2jq5A_
PDB info PDB header:structural genomicsChain: A: PDB Molecule:sec-c motif; PDBTitle: solution structure of rpa3114, a sec-c motif containing2 protein from rhodopseudomonas palustris; northeast3 structural genomics consortium target rpt5 / ontario4 center for structural proteomics target rp3097
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  CPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEHC
Query Conservation 





  
  

 
 
 
   
 


 








     


  
 

  
       
        
  



 
 
Alig confidence 















































































Template Conservation 





  
  

 
 
 
   
 


 









     

  
 

                   
  
 
    
Template Sequence  CVCGSGKTYDDCCGPLLARTRSAASPEALMRSRYAAYALKDFDYIVETTDPERRDLFDHDVNRAWMEESDFLELRVLGSS
Template Known Secondary structure 
SSSSSS
TT
S


STT
TB
TT

Template Predicted Secondary structure 

































Template SS confidence 















































































   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   85....90.........100.. .......110.........120.........130
Predicted Secondary structure 





.







Query SS confidence 

















.



























Query Sequence  WQDADNIGFVSFVARFTE. GGKTGAIIERSRFLKENGQWYYIDGTRP
Query Conservation   
     
 


 
 
  . 
      


 
 
 

 
 
 

   
Alig confidence  ..















.



























Template Conservation  ..     
 


 
 
           
 
 
 
  
 
 
 

   
Template Sequence  . . EKGSRGTVEFIARFRRGGGPEQSHHERSQFRKARGRWYFSEGEAV
Template Known Secondary structure  ..TTSSS
TTS
Template Predicted Secondary structure  ..








Template SS confidence 














































   83......90.........100.........110.........120.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions