Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Q	L	C	P	C	G	S	A	V	E	Y	S	L	C	C	H	P	Y	V	S	G	E	K	V	A	P	D	P	E	H	L	M	R	S	R	Y	C	A	F	V	M	Q	D	A	D	Y	L	I	K	T	W	H	P	S	C	G	A	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																	?		?			?					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	L	R	A	E	L	M	A	G	F	A	H	T	E	W	L	G	L	T	V	F	E	H	C	W	Q	D	A	D	N	I	G	F	V	S	F	V	A	R	F	T	E	G	G	K	T	G	A	I	I	E	R	S	R	F	L	K	E	N	G
Secondary structure
SS confidence
Disorder																							?	?	?	?	?	?	?	?	?	?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Sequence		Q	W	Y	Y	I	D	G	T	R	P	Q	F	G	R	N	D	P	C	P	C	G	S	G	K	K	F	K	K	C	C	G	Q
Secondary structure
SS confidence
Disorder		?						?	?	?	?	?	?	?	?	?	?													?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2i9w chain A Region: 2 - 152 Aligned: 151 Modelled: 150 Confidence: 100.0% Identity: 36% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a sec-c motif containing protein (psyc_2064) from2 psychrobacter arcticus at 1.75 a resolution Phyre2 PDB 2jq5 chain A Region: 5 - 130 Aligned: 124 Modelled: 126 Confidence: 100.0% Identity: 35% PDB header:structural genomics Chain: A: PDB Molecule:sec-c motif; PDBTitle: solution structure of rpa3114, a sec-c motif containing2 protein from rhodopseudomonas palustris; northeast3 structural genomics consortium target rpt5 / ontario4 center for structural proteomics target rp3097 Phyre2 PDB 2i9w chain A domain 1 Region: 26 - 129 Aligned: 104 Modelled: 104 Confidence: 100.0% Identity: 34% Fold: Cystatin-like Superfamily: NTF2-like Family: SEC-C associated NTF2-like domain Phyre2 PDB 1ozb chain I Region: 132 - 152 Aligned: 21 Modelled: 21 Confidence: 98.9% Identity: 71% PDB header:protein transport Chain: I: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of secb complexed with seca c-terminus Phyre2 PDB 1ozb chain I Region: 132 - 152 Aligned: 21 Modelled: 21 Confidence: 98.9% Identity: 71% Fold: Sec-C motif Superfamily: Sec-C motif Family: Sec-C motif Phyre2 PDB 1ozb chain J Region: 132 - 152 Aligned: 21 Modelled: 21 Confidence: 98.9% Identity: 71% PDB header:protein transport Chain: J: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of secb complexed with seca c-terminus Phyre2 PDB 1tm6 chain A Region: 133 - 152 Aligned: 20 Modelled: 20 Confidence: 98.9% Identity: 80% Fold: Sec-C motif Superfamily: Sec-C motif Family: Sec-C motif Phyre2 PDB 1tm6 chain A Region: 133 - 152 Aligned: 20 Modelled: 20 Confidence: 98.9% Identity: 80% PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: nmr structure of the free zinc binding c-terminal domain of2 seca Phyre2 PDB 2i9w chain A domain 3 Region: 131 - 151 Aligned: 21 Modelled: 21 Confidence: 97.7% Identity: 57% Fold: Sec-C motif Superfamily: Sec-C motif Family: Sec-C motif Phyre2 PDB 3gwr chain A Region: 24 - 125 Aligned: 102 Modelled: 100 Confidence: 96.8% Identity: 25% PDB header:protein binding Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution Phyre2 PDB 2r4i chain A domain 1 Region: 31 - 133 Aligned: 103 Modelled: 103 Confidence: 96.5% Identity: 15% Fold: Cystatin-like Superfamily: NTF2-like Family: CHU142-like Phyre2 PDB 3ksp chain A Region: 31 - 125 Aligned: 95 Modelled: 95 Confidence: 96.4% Identity: 12% PDB header:unknown function Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain; PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution Phyre2 PDB 3cnx chain A domain 1 Region: 31 - 125 Aligned: 95 Modelled: 95 Confidence: 95.7% Identity: 17% Fold: Cystatin-like Superfamily: NTF2-like Family: SAV4671-like Phyre2 PDB 3ke7 chain A Region: 30 - 125 Aligned: 96 Modelled: 96 Confidence: 95.5% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:putative ketosteroid isomerase; PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution Phyre2 PDB 2f86 chain B domain 1 Region: 31 - 125 Aligned: 95 Modelled: 95 Confidence: 94.9% Identity: 16% Fold: Cystatin-like Superfamily: NTF2-like Family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A Phyre2 PDB 3f14 chain A Region: 31 - 121 Aligned: 89 Modelled: 91 Confidence: 94.5% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of ntf2-like protein of unknown function2 (yp_680363.1) from cytophaga hutchinsonii atcc 33406 at 1.45 a3 resolution Phyre2 PDB 3gzr chain A Region: 32 - 137 Aligned: 106 Modelled: 106 Confidence: 94.3% Identity: 21% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold; PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution Phyre2 PDB 2ux0 chain A domain 1 Region: 31 - 125 Aligned: 95 Modelled: 95 Confidence: 94.1% Identity: 13% Fold: Cystatin-like Superfamily: NTF2-like Family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A Phyre2 PDB 2i9w chain A domain 2 Region: 3 - 23 Aligned: 21 Modelled: 21 Confidence: 94.0% Identity: 48% Fold: Sec-C motif Superfamily: Sec-C motif Family: Sec-C motif Phyre2 PDB 2bng chain A domain 1 Region: 29 - 121 Aligned: 93 Modelled: 93 Confidence: 94.0% Identity: 12% Fold: Cystatin-like Superfamily: NTF2-like Family: Limonene-1,2-epoxide hydrolase-like Phyre2 1 c2i9wA_ 2 c2jq5A_ 3 d2i9wa1 4 c1ozbI_ 5 d1ozbi_ 6 c1ozbJ_ 7 d1tm6a_ 8 c1tm6A_ 9 d2i9wa3 10 c3gwrA_ 11 d2r4ia1 12 c3kspA_ 13 d3cnxa1 14 c3ke7A_ 15 d2f86b1 16 c3f14A_ 17 c3gzrA_ 18 d2ux0a1 19 d2i9wa2 20 d2bnga1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2i9wA_ 100.0 36 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a sec-c motif containing protein (psyc_2064) from2 psychrobacter arcticus at 1.75 a resolution 2 c2jq5A_ 100.0 35 PDB header:structural genomics Chain: A: PDB Molecule:sec-c motif; PDBTitle: solution structure of rpa3114, a sec-c motif containing2 protein from rhodopseudomonas palustris; northeast3 structural genomics consortium target rpt5 / ontario4 center for structural proteomics target rp3097 3 d2i9wa1 100.0 34 Fold:Cystatin-like Superfamily:NTF2-like Family:SEC-C associated NTF2-like domain 4 c1ozbI_ 98.9 71 PDB header:protein transport Chain: I: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of secb complexed with seca c-terminus 5 d1ozbi_ 98.9 71 Fold:Sec-C motif Superfamily:Sec-C motif Family:Sec-C motif 6 c1ozbJ_ 98.9 71 PDB header:protein transport Chain: J: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of secb complexed with seca c-terminus 7 d1tm6a_ 98.9 80 Fold:Sec-C motif Superfamily:Sec-C motif Family:Sec-C motif 8 c1tm6A_ 98.9 80 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: nmr structure of the free zinc binding c-terminal domain of2 seca 9 d2i9wa3 97.7 57 Fold:Sec-C motif Superfamily:Sec-C motif Family:Sec-C motif 10 c3gwrA_ 96.8 25 PDB header:protein binding Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution 11 d2r4ia1 96.5 15 Fold:Cystatin-like Superfamily:NTF2-like Family:CHU142-like 12 c3kspA_ 96.4 12 PDB header:unknown function Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain; PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution 13 d3cnxa1 95.7 17 Fold:Cystatin-like Superfamily:NTF2-like Family:SAV4671-like 14 c3ke7A_ 95.5 15 PDB header:isomerase Chain: A: PDB Molecule:putative ketosteroid isomerase; PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution 15 d2f86b1 94.9 16 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 16 c3f14A_ 94.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of ntf2-like protein of unknown function2 (yp_680363.1) from cytophaga hutchinsonii atcc 33406 at 1.45 a3 resolution 17 c3gzrA_ 94.3 21 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold; PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution 18 d2ux0a1 94.1 13 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 19 d2i9wa2 94.0 48 Fold:Sec-C motif Superfamily:Sec-C motif Family:Sec-C motif 20 d2bnga1 94.0 12 Fold:Cystatin-like Superfamily:NTF2-like Family:Limonene-1,2-epoxide hydrolase-like 21 d3dm8a1 not modelled 93.3 10 Fold:Cystatin-like Superfamily:NTF2-like Family:Rpa4348-like 22 d2rcda1 not modelled 93.0 16 Fold:Cystatin-like Superfamily:NTF2-like Family:BxeB1374-like 23 d2k54a1 not modelled 92.8 19 Fold:Cystatin-like Superfamily:NTF2-like Family:Atu0742-like 24 d3bb9a1 not modelled 92.6 13 Fold:Cystatin-like Superfamily:NTF2-like Family:SO0125-like 25 d2a15a1 not modelled 91.9 13 Fold:Cystatin-like Superfamily:NTF2-like Family:Ketosteroid isomerase-like 26 c3grdA_ not modelled 91.7 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized ntf2-superfamily protein; PDBTitle: crystal structure of ntf2-superfamily protein with unknown2 function (np_977240.1) from bacillus cereus atcc 10987 at3 1.25 a resolution 27 d2geya1 not modelled 91.5 19 Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase 28 d3ec9a1 not modelled 91.3 13 Fold:Cystatin-like Superfamily:NTF2-like Family:PhzA/PhzB-like 29 c3k0zB_ not modelled 91.0 12 PDB header:lyase Chain: B: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of putative polyketide cyclase (np_977253.1) from2 bacillus cereus atcc 10987 at 1.91 a resolution 30 c3k7cC_ not modelled 90.7 9 PDB header:protein binding Chain: C: PDB Molecule:putative ntf2-like transpeptidase; PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution 31 c3fgyB_ not modelled 90.4 19 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of a ntf2-like protein (bxe_b1094) from burkholderia2 xenovorans lb400 at 1.59 a resolution 32 d3b7ca1 not modelled 90.3 13 Fold:Cystatin-like Superfamily:NTF2-like Family:SO0125-like 33 c3g8zA_ not modelled 89.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function with cystatin-like fold; PDBTitle: crystal structure of protein of unknown function with cystatin-like2 fold (np_639274.1) from xanthomonas campestris at 1.90 a resolution 34 c1tuhA_ not modelled 89.2 22 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein egc068; PDBTitle: structure of bal32a from a soil-derived mobile gene cassette 35 d1tuha_ not modelled 89.2 22 Fold:Cystatin-like Superfamily:NTF2-like Family:Hypothetical protein egc068 from a soil-derived mobile gene cassette 36 c3f7sA_ not modelled 88.3 15 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution 37 d1nwwa_ not modelled 86.9 17 Fold:Cystatin-like Superfamily:NTF2-like Family:Limonene-1,2-epoxide hydrolase-like 38 d3d9ra1 not modelled 86.8 20 Fold:Cystatin-like Superfamily:NTF2-like Family:ECA1476-like 39 d2gxfa1 not modelled 85.9 16 Fold:Cystatin-like Superfamily:NTF2-like Family:YybH-like 40 d1hkxa_ not modelled 84.4 12 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 41 c3robC_ not modelled 83.6 16 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776 42 c3fsdA_ not modelled 82.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake; PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution 43 d2gexa1 not modelled 81.8 13 Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase 44 d1s5aa_ not modelled 80.6 14 Fold:Cystatin-like Superfamily:NTF2-like Family:PhzA/PhzB-like 45 d3ebta1 not modelled 78.3 16 Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase 46 d1ohpa1 not modelled 77.7 19 Fold:Cystatin-like Superfamily:NTF2-like Family:Ketosteroid isomerase-like 47 c3h51A_ not modelled 77.5 9 PDB header:protein binding Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution 48 c3f7xA_ not modelled 76.8 16 PDB header:unknown function Chain: A: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of a putative polyketide cyclase (pp0894) from2 pseudomonas putida kt2440 at 1.24 a resolution 49 d1sjwa_ not modelled 76.1 15 Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase 50 c1z1sA_ not modelled 73.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa3332; PDBTitle: crystal structure of putative isomerase pa3332 from2 pseudomonas aeruginosa 51 d1z1sa1 not modelled 73.1 17 Fold:Cystatin-like Superfamily:NTF2-like Family:PhzA/PhzB-like 52 d1oh0a_ not modelled 72.5 15 Fold:Cystatin-like Superfamily:NTF2-like Family:Ketosteroid isomerase-like 53 d3dmca1 not modelled 71.0 9 Fold:Cystatin-like Superfamily:NTF2-like Family:PhzA/PhzB-like 54 c3fh1A_ not modelled 66.2 16 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of a ntf2-like protein of unknown function (mll8193)2 from mesorhizobium loti at 1.60 a resolution 55 c3hx8A_ not modelled 64.3 15 PDB header:isomerase Chain: A: PDB Molecule:putative ketosteroid isomerase; PDBTitle: crystal structure of putative ketosteroid isomerase2 (np_103587.1) from mesorhizobium loti at 1.45 a resolution 56 c3h3hA_ not modelled 59.7 11 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized snoal-like protein; PDBTitle: crystal structure of a snoal-like protein of unknown function2 (bth_ii0226) from burkholderia thailandensis e264 at 1.60 a3 resolution 57 c3ff2A_ not modelled 57.5 15 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized cystatin fold protein (yp_497570.1) from PDBTitle: crystal structure of an uncharacterized cystatin fold protein2 (saro_2299) from novosphingobium aromaticivorans dsm at 1.90 a3 resolution 58 c3ehcA_ not modelled 55.8 16 PDB header:unknown function Chain: A: PDB Molecule:snoal-like polyketide cyclase; PDBTitle: crystal structure of a snoal-like polyketide cyclase (atu3018) from2 agrobacterium tumefaciens str. c58 at 2.12 a resolution 59 c3hk4B_ not modelled 54.2 17 PDB header:lyase Chain: B: PDB Molecule:mlr7391 protein; PDBTitle: crystal structure of a putative snoal-like polyketide cyclase2 [carbohydrate phosphatase] (mlr7391) from mesorhizobium loti at 1.963 a resolution 60 c3bb9D_ not modelled 52.8 16 PDB header:unknown function Chain: D: PDB Molecule:putative orphan protein; PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution 61 d1vqqa1 not modelled 50.0 12 Fold:Cystatin-like Superfamily:NTF2-like Family:Penicillin binding protein 2a (PBP2A), N-terminal domain 62 c3f9sB_ not modelled 49.9 12 PDB header:lyase Chain: B: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of a putative polyketide cyclase (lferr_0659) from2 acidithiobacillus ferrooxidans atcc at 1.76 a resolution 63 d2owpa1 not modelled 47.6 12 Fold:Cystatin-like Superfamily:NTF2-like Family:BxeB1374-like 64 c3ff0A_ not modelled 44.2 21 PDB header:biosynthetic protein Chain: A: PDB Molecule:phenazine biosynthesis protein phzb 2; PDBTitle: crystal structure of a phenazine biosynthesis-related protein (phzb2)2 from pseudomonas aeruginosa at 1.90 a resolution 65 c3f8hA_ not modelled 43.8 16 PDB header:unknown function Chain: A: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of a putative polyketide cyclase (tm1040_3560) from2 silicibacter sp. tm1040 at 2.00 a resolution 66 c3soyA_ not modelled 43.2 17 PDB header:membrane protein Chain: A: PDB Molecule:ntf2-like superfamily protein; PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 67 d2bmla1 not modelled 41.5 53 Fold:beta-hairpin stack Superfamily:Cell wall binding repeat Family:Cell wall binding repeat 68 d2a1ka1 not modelled 39.0 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Phage ssDNA-binding proteins 69 c3f40A_ not modelled 38.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of ntf2-like protein of unknown function2 (yp_677363.1) from cytophaga hutchinsonii atcc 33406 at3 1.27 a resolution 70 d3blza1 not modelled 37.2 12 Fold:Cystatin-like Superfamily:NTF2-like Family:Sbal0622-like 71 c3msoA_ not modelled 36.6 14 PDB header:isomerase Chain: A: PDB Molecule:steroid delta-isomerase; PDBTitle: crystal structure of a steroid delta-isomerase (np_250810.1) from2 pseudomonas aeruginosa at 2.57 a resolution 72 d3b8la1 not modelled 36.3 10 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 73 d1gpca_ not modelled 35.9 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Phage ssDNA-binding proteins 74 c2ra9A_ not modelled 35.3 35 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein duf1285; PDBTitle: crystal structure of a duf1285 family protein (sbal_2486) from2 shewanella baltica os155 at 1.40 a resolution 75 c3hzpA_ not modelled 35.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution 76 c3kkgA_ not modelled 33.6 16 PDB header:lyase Chain: A: PDB Molecule:putative snoal-like polyketide cyclase; PDBTitle: crystal structure of putative snoal-like polyketide cyclase2 (yp_509242.1) from jannaschia sp. ccs1 at 1.40 a resolution 77 c3g0kA_ not modelled 33.3 17 PDB header:ca-binding protein Chain: A: PDB Molecule:putative membrane protein; PDBTitle: crystal structure of a protein of unknown function with a cystatin-2 like fold (saro_2880) from novosphingobium aromaticivorans dsm at3 1.30 a resolution 78 d2f99a1 not modelled 32.5 16 Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase 79 c3cooB_ not modelled 32.2 20 PDB header:cell adhesion Chain: B: PDB Molecule:spondin-1; PDBTitle: the crystal structure of reelin-n domain of f-spondin 80 d1wgea1 not modelled 26.8 71 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 81 d1nuia2 not modelled 25.8 56 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 82 d1o9ga_ not modelled 25.7 100 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase AviRa 83 c3r1fO_ not modelled 24.7 22 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 84 d1njha_ not modelled 24.2 15 Fold:Hypothetical protein YojF Superfamily:Hypothetical protein YojF Family:Hypothetical protein YojF 85 d1ywsa1 not modelled 24.0 71 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 86 c3i0yC_ not modelled 23.8 21 PDB header:isomerase Chain: C: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of a putative polyketide cyclase (xcc0381) from2 xanthomonas campestris pv. campestris at 1.50 a resolution 87 d2baaa_ not modelled 23.7 27 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Family 19 glycosidase 88 d1mo6a2 not modelled 22.6 20 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 89 d1ubea2 not modelled 21.8 25 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 90 d3dxoa1 not modelled 21.6 14 Fold:Cystatin-like Superfamily:NTF2-like Family:Atu0744-like 91 d1h8ga_ not modelled 20.8 33 Fold:beta-hairpin stack Superfamily:Cell wall binding repeat Family:Cell wall binding repeat 92 d1u94a2 not modelled 19.3 25 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 93 d2rgqa1 not modelled 19.0 11 Fold:Cystatin-like Superfamily:NTF2-like Family:Rv3472-like 94 c1ox3A_ not modelled 18.7 17 PDB header:chaperone Chain: A: PDB Molecule:fibritin; PDBTitle: crystal structure of mini-fibritin 95 c1mwuA_ not modelled 18.6 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:penicillin-binding protein 2a; PDBTitle: structure of methicillin acyl-penicillin binding protein 2a2 from methicillin resistant staphylococcus aureus strain3 27r at 2.60 a resolution. 96 c3hiaB_ not modelled 18.4 24 PDB header:choline-binding protein Chain: B: PDB Molecule:choline binding protein; PDBTitle: crystal structure of the choline binding domain of spr1274 in2 streptococcus pneumoniae 97 d3cu3a1 not modelled 17.6 16 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 98 d1xp8a2 not modelled 17.3 25 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 99 c1z5sD_ not modelled 17.1 20 PDB header:ligase Chain: D: PDB Molecule:ran-binding protein 2; PDBTitle: crystal structure of a complex between ubc9, sumo-1,2 rangap1 and nup358/ranbp2

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0