Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 88 Aligned Residues 309 % Identity 21% Template c3ritE_ PDB info PDB header:isomerase Chain: E: PDB Molecule:dipeptide epimerase; PDBTitle: crystal structure of dipeptide epimerase from methylococcus capsulatus2 complexed with mg and dipeptide l-arg-d-lys Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.									.	.	.	.	.	.	.					.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure											.	.	.	.	.	.	.	.								.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.								.	.	.	.
Query Sequence		K	I	V	K	I	I	G	R	E	.	.	.	.	.	.	.	.	I	I	D	S	R	G	N	.	.	.	.	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A
Query Conservation											.	.	.	.	.	.	.	.								.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.								.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	A	D	I	Q	V	R	T	E	H	F	P	L	T	R	P	Y	R	I	A	F	R	S	I	E	E	I	D	N	L	I	V	E	I	R	T	A	D	G	L	L	G	L	G	A	A	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	H	V	T	G	E	T	L	E	A	C	H	A	A
Template Known Secondary structure																						T	T																T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M
Query Conservation
Alig confidence																																	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template Sequence		L	D	H	D	R	L	G	W	L	M	G	R	D	I	R	T	L	P	R	L	C	R	E	L	A	E	R	L	P	A	A	.	.	.	.	.	.	P	A	A	R	A	A	L	D	M	A	L	H	D	L	V	A	Q	C	L	G	L	P	L	V	E	I	L	G	R	A	H	D	S	.	.	.	.	.	.	.	L	P	T
Template Known Secondary structure		T		T	T	T	T	G	G	G	T	T			G	G	G												S	T	T		.	.	.	.	.	.																				T	S	B					S			S		S		.	.	.	.	.	.	.			B
Template Predicted Secondary structure																																	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.								130	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	V	T	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	P	V	E	E	T	L	A	E	A	R	E	H	L	A	L	G	F	R	V	L	K	V	K	L	C	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	E	Q	D	F	E	R	L	R	R	L	H	E	T	L
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																T	T										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.																	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.																.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		.	.	.	.	.	.	.	A	G	R	A	V	V	R	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	Q	S	Y	D	R	D	G	L	L	R	L	D	R	L	V	.	Q	E	L	G	I	E	F	I	E	Q	P	F	P	A	G	R	T	D	W	L	R	A	L	P	K	A	I	R	R
Template Known Secondary structure		.	.	.	.	.	.	.	S	S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T															.				T								S		T	T							T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
									182	.	.	.	.	.	.	.	190																		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	.	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A
Query Conservation																		.
Alig confidence						.	.	.										.																																													.
Template Conservation						.	.	.																																																							.
Template Sequence		R	I	A	A	.	.	.	D	E	S	L	L	G	P	A	D	A	F	A	L	A	A	P	P	A	A	C	G	I	F	N	I	K	L	M	K	C	G	G	L	A	P	A	R	R	I	A	T	I	A	E	T	A	G	I	D	L	M	W	G	C	.	M	D	E	S	R	I	S	I	A	A	A	L	H	A	A	L	A	C
Template Known Secondary structure		T				.	.	.	S	T	T			S									S	S	S		S		S										T	S															T								.		S															T
Template Predicted Secondary structure						.	.	.																																																							.
Template SS confidence
		237	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	I	K	T	G	S	M	S	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	T	R	Y	L	D	L	D	G	S
Template Known Secondary structure		T	T							G	G	G
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions