Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 103 Aligned Residues 322 % Identity 12% Template c3nxlD_ PDB info PDB header:lyase Chain: D: PDB Molecule:glucarate dehydratase; PDBTitle: crystal structure of glucarate dehydratase from burkholderia cepacia2 complexed with magnesium Resolution 1.89 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.													.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	I	V	K	I	I	G	R	E	I	I	D	.	.	.	.	.	.	.	.	.	.	.	.	S	R	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	R	V	T	R	X	Q	V	I	P	V	A	G	R	D	S	X	L	L	N	L	C	G	A	H	A	P	Y	F	T	R	N	L	V	I	L	D	D	S	S	G	H	T	G	V	G	E	V	P	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	I	R
Template Known Secondary structure			B																B			T	T					S												T	T	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.																										.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		A	V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	.	E	L	N	G	T	P	G	K	Y	S	M	P	V
Query Conservation																																																																				.
Alig confidence																																		.	.	.	.	.	.																													.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		H	A	L	E	R	X	T	D	L	V	V	G	Q	S	I	G	R	Y	Q	A	T	L	N	A	V	R	A	A	L	S	R	L	.	.	.	.	.	.	D	N	V	I	T	A	I	E	A	A	L	L	D	L	L	G	Q	H	L	D	V	P	V	A	A	L	L	G	E	G	Q	Q	R	D	A	V	P	X	L	A	Y	L
Template Known Secondary structure												T	T	S	B	G	G	G															T	.	.	.	.	.	.																				T	S	B	G	G	G	G	S	T	T					S				B
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E
Query Conservation
Alig confidence																																																	.	.	.	.												.	.
Template Conservation																																																	.	.	.	.												.	.
Template Sequence		F	Y	I	G	D	R	G	R	T	D	L	P	Y	R	D	E	A	Q	A	R	T	P	W	F	R	L	R	N	E	E	A	L	T	P	A	A	I	A	R	Q	A	E	A	A	V	D	R	.	.	.	.	Y	G	F	A	D	F	K	L	K	G	G	.	.	V	X	A	G	A	D	E	X	E	A	I	A	A	I	K	A
Template Known Secondary structure				B			G	G	G			S						T	T		S	S						T	T	S		B		S															.	.	.	.											S	.	.	S	S
Template Predicted Secondary structure																																																	.	.	.	.												.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.					.	.	300	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.
Query SS confidence																																																																							.	.	.	.
Query Sequence		A	V	K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	.	.	.	.	W	D	G	F	A	Y	Q
Query Conservation																																																																							.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		C	.	.	.	.	.	.	.	.	F	P	D	A	R	A	T	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	G	A	W	S	L	D	E	A	V	A	L	C	R	G	Q	.	.	G	H	L	L	A	Y	A	E	D	P	C	G	P	E	G	G	Y	S	G	R	E	V	X	A	E	F
Template Known Secondary structure			.	.	.	.	.	.	.	.		T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	B	B										T	T		.	.	T	T	T		S				S		B			B	T	T	B
Template Predicted Secondary structure			.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		246									.	.	.	250	.	.	.	.	.																		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	V	L	G	D	K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A
Query Conservation
Alig confidence												.	.	.																											.																												.
Template Conservation												.	.	.																											.																												.
Template Sequence		R	R	A	T	G	I	P	T	A	T	.	.	.	N	X	I	A	T	D	W	R	Q	X	D	H	A	V	R	L	Q	A	V	D	I	P	L	A	D	P	.	H	F	W	T	X	Q	G	S	V	R	L	A	Q	L	C	R	D	W	G	L	T	W	G	S	H	S	N	.	N	H	F	D	V	S	L	A	X	F	T	H
Template Known Secondary structure												.	.	.	S	S	S			S											T			S			B				.																			T				B					.	S
Template Predicted Secondary structure												.	.	.																											.																												.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.
		385	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	T	A	A	G	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	A	A	A	P	G	T
Template Known Secondary structure					T			S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions