Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 99 Aligned Residues 329 % Identity 14% Template c3n6jA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from actinobacillus succinogenes 130z Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.													.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	K	I	V	K	I	I	G	R	E	I	I	D	.	.	.	.	.	.	.	.	.	.	.	.	S	R	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	V	I	T	D	X	K	V	I	P	V	A	G	H	D	S	X	L	X	N	V	G	G	A	H	S	P	Y	F	T	R	N	I	V	I	L	T	D	N	S	G	H	T	G	V	G	E	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	A	T	I	E
Template Known Secondary structure				B																B			T	T					S												T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.																									.	.	60	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.										.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.																													.
Query SS confidence																																									.	.	.	.	.	.	.	.	.																													.
Query Sequence		A	A	V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	.	.	.	.	.	.	.	.	.	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	.	E	L	N
Query Conservation																																									.	.	.	.	.	.	.	.	.																													.
Alig confidence							.																																		.	.	.	.	.	.	.	.	.																													.
Template Conservation							.
Template Sequence		N	A	L	T	E	.	A	I	P	H	V	V	G	R	P	I	S	I	L	N	K	I	V	N	D	X	H	N	G	Y	L	D	A	D	Y	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	X	G	Q	F	L	G	V	P	V	A	E	L	L	G	P	G	K	Q
Template Known Secondary structure						T	.	T	G	G	G	T	T	T		B	G	G	G																							S			T	T	S	S	T																				T	S	B	G	G	G	T	S	T	T
Template Predicted Secondary structure							.
Template SS confidence
		64	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	P	G	K	Y	S	M	P	V	P	M	M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S
Query Conservation
Alig confidence																																																											.	.	.	.														.	.
Template Conservation																																																											.	.	.	.														.	.
Template Sequence		R	D	E	V	T	V	L	G	Y	L	F	Y	V	G	D	D	K	I	T	D	L	P	Y	Q	Q	P	V	T	G	K	H	E	W	Y	D	I	R	R	K	K	A	X	D	T	Q	A	V	I	E	L	A	A	A	S	K	D	R	.	.	.	.	Y	G	F	K	D	F	K	L	K	G	G	V	F	.	.	E	G	S	K
Template Known Secondary structure			S				B							B			G	G	G	S		S								S	S							T	T	S		B		S															.	.	.	.				S							S	S	S	.	.
Template Predicted Secondary structure																																																											.	.	.	.														.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		N	A	E	A	L	A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	.
Query Conservation																																																																																	.
Alig confidence													.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.				.													.
Template Conservation													.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.				.
Template Sequence		E	I	D	T	V	I	E	L	K	K	H	.	.	.	.	.	.	.	.	F	P	D	A	R	I	T	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	G	C	W	S	L	D	E	A	I	Q	L	C	K	G	L	.	N	D	V	.	L	T	Y	A	E	D	P	C	I	G	E	N	G
Template Known Secondary structure													.	.	.	.	.	.	.	.		S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	B	B										T	T		.	T	T	T	.		S				S		B			B	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.				.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.									.	.	230	.	.	.	.	.	.																		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.
					298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	W	D	G	F	A	Y	Q	T	K	V	L	G	D	K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E
Query Conservation		.	.	.
Alig confidence		.	.	.																		.	.	.																											.																												.
Template Conservation																						.	.	.																											.																												.
Template Sequence		Y	S	G	R	E	I	X	A	E	F	R	R	R	T	G	I	P	T	A	T	.	.	.	N	X	I	A	T	N	W	R	E	X	C	H	A	I	X	L	Q	S	V	D	I	P	L	A	D	P	.	H	F	W	T	L	T	G	A	S	R	V	A	Q	L	C	N	E	W	G	L	T	W	G	C	H	S	N	.	N	H
Template Known Secondary structure		B																				.	.	.	S	S	S			S											T			S			B				.																			T				B					.	S
Template Predicted Secondary structure																						.	.	.																											.																												.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	D	A	T	I	A	D	L	A	V	G	T	A	A	G	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	D	I	S	L	A	X	F	S	H	V	G	A	A	A	P	G	N
Template Known Secondary structure															T			S
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions