Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 68 Aligned Residues 310 % Identity 18% Template c3mwcA_ PDB info PDB header:ligase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of probable o-succinylbenzoic acid synthetase from2 kosmotoga olearia Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10	.	.									.	.	.	.	.	.	.	20					.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.									.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.									.	.	.	.
Query Sequence		S	K	I	V	K	I	I	G	R	E	I	.	.	.	.	.	.	.	.	I	D	S	R	G	N	P	T	.	.	.	.	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A
Query Conservation													.	.	.	.	.	.	.	.									.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.									.	.	.	.							.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	I	D	G	V	S	L	Y	E	I	V	I	P	M	K	I	P	F	Q	I	S	S	G	T	C	Y	T	R	R	S	L	V	V	E	I	R	.	E	G	D	L	F	G	Y	G	E	S	A	P	F	E	E	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	G	E	T	L	E	T	T	K	V
Template Known Secondary structure																	S	S				B	T	T	B														.		T	T										B	S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T		B
Template Predicted Secondary structure																																							.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.															60	.	.	.	.	.	.	.	.	.	70
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		A	V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																		.	.	.	.	.	.																																								.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		I	L	K	N	H	L	L	P	M	I	L	G	K	E	P	L	S	I	E	E	F	N	H	L	I	K	N	G	I	R	G	N	.	.	.	.	.	.	H	F	A	R	C	G	V	E	N	A	Y	W	D	L	I	A	K	K	N	K	I	S	L	K	A	M	I	E	K	K	M	K	N	L	G	V	K	Q	E	Y	L	A
Template Known Secondary structure						T						T	T				S	S											S			S		.	.	.	.	.	.																			T	T		B												T	T			G	G	G	G
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.							.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
					147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	P	V	P	M	M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L
Query Conservation		.	.	.
Alig confidence		.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	N	N	Y	I	E	S	G	A	A	L	G	I	P	E	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	E	T	L	I	H	Q	V	E	E	S	L	Q	E	G	Y	R	R	I	K	I	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	G	W	D	V	E	P	L
Template Known Secondary structure		B		S				B								T	T		.	.	.	.	.	.	.	.	.	.	.	.	.																T		S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	T	T	B	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.														.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																		.	.	.	.	190	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y
Query Conservation
Alig confidence									.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.										.
Template Conservation									.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.										.
Template Sequence		Q	E	T	R	R	A	V	.	.	.	.	.	.	.	G	D	H	F	P	L	W	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	S	S	F	E	L	.	D	Q	W	E	T	F	K	A	M	.	D	A	A	K	C	L	F	H	E	Q	P	L	H	Y	E	A	L	L	D	L	K	E
Template Known Secondary structure									.	.	.	.	.	.	.		T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T				G	.	G	G								.	G	G	G			S				S		S		T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.										.
Template SS confidence
		195	.	.	.	.	200	.								.	.	.	.	.	.	.	.	210																		.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	K	V	L	G	D	K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L
Query Conservation
Alig confidence													.	.	.																																																								.
Template Conservation													.	.	.																																																								.
Template Sequence		L	G	E	R	I	E	T	P	I	C	L	.	.	.	D	E	S	L	I	S	S	R	V	A	E	F	V	A	K	L	G	I	S	N	I	W	N	I	K	I	Q	R	V	G	G	L	L	E	A	I	K	I	Y	K	I	A	T	D	N	G	I	K	L	W	G	G	T	M	P	.	E	S	G	L	G	A	R	F	L	I
Template Known Secondary structure						S	S	S					.	.	.	S	T	T			S										T	T			S										T	S														T	T								S		.
Template Predicted Secondary structure													.	.	.																																																								.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.
		384	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	T	A	A	G	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	A	S	F	R	G	F	V
Template Known Secondary structure				T	T	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions