Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 38 Aligned Residues 319 % Identity 18% Template c3mkcA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:racemase; PDBTitle: crystal structure of a putative racemase Resolution 1.77 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	K	I	V	K	I	I	G	R	E	I	I	D	S	R	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A	V	N	G	P	I	A	Q	A	L	I
Query Conservation
Alig confidence												.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation												.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		V	A	P	I	K	S	I	E	F	I	.	P	V	N	Y	Q	S	Q	N	T	V	V	V	K	V	T	D	E	N	G	V	Y	G	L	G	E	A	D	G	S	P	D	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	Y	A	N	I	E	T	E	H	K	W	L	T	N	.	I	T	E	K	A	I
Template Known Secondary structure												.																	T	T	S									S						.	.	.	.	.	.	.	.	.	.	.	.	.	.					T					B	T	T	B			.	T	T	T	T	T	T
Template Predicted Secondary structure												.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.															.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M	M	N	I	I	N	G	G	E	H	A
Query Conservation
Alig confidence																																																														.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.
Template Sequence		G	R	L	P	I	E	I	N	A	I	W	D	A	X	Y	D	A	T	Q	W	Q	G	X	R	G	L	G	X	F	A	L	S	G	I	D	X	A	L	Y	D	L	A	G	K	Q	L	G	V	P	A	Y	Q	L	L	G	G	T	N	K	D	.	.	.	.	.	.	K	V	H	P	Y	L	T	L	Y	P	A	I	P	D
Template Known Secondary structure		T	S		T	T													T					S	S	T																						T		B					T	T			S		S	.	.	.	.	.	.											S
Template Predicted Secondary structure																																																														.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.	.	150
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	.	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G	K
Query Conservation																																																								.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.																	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.
Template Sequence		A	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	A	I	K	G	Y	A	P	L	L	E	K	A	K	A	H	N	I	R	A	V	K	V	C	V	P	I	K	A	D	W	S	T	K	E	V	A	Y	Y	L	R	E	L	R	G	I	L	.	.	.	.	.	.	.	G	H
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T		S								T	T																				.	.	.	.	.	.	.		S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.
Template SS confidence
		152	.	.																					.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.								.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	.	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D	K	I	Q	L	V	G	D	D
Query Conservation																																.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.												.																																		.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																																		.	.	.
Template Sequence		D	T	D	X	X	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	Y	R	F	T	D	W	Y	E	V	A	R	L	L	N	S	I	.	E	D	L	E	L	Y	F	A	E	A	T	L	Q	H	D	D	L	S	G	H	A	K	L	V	E	N	T	R	S	R	I	C	G	.	.	.	A
Template Known Secondary structure		S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T															T	.	G	G	G			S				S		S		T	T													S	S		B			.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																																		.	.	.
Template SS confidence
		205	.	.	.	.	210	.																		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	X	S	T	T	R	F	E	A	E	E	W	I	T	K	G	K	V	H	L	L	Q	S	D	Y	N	R	C	G	G	L	T	E	L	R	R	I	T	E	X	A	T	A	N	N	V	Q	V	X	P	H	N	W	K	T	G	I	T	S	A	A	A	I	H	Y	Q	F	A	V	G	N
Template Known Secondary structure		T	T													T	T			S						T	T	T	T	T															T	T									S															T
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions