Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 66 Aligned Residues 302 % Identity 22% Template c3ik4A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from herpetosiphon aurantiacus Resolution 2.10 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.					20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure				.																		.	.	.	.
Query SS confidence				.																		.	.	.	.
Query Sequence		M	S	.	K	I	V	K	I	I	G	R	E	I	I	D	S	R	G	N	P	.	.	.	.	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A	V	N	G	P	I
Query Conservation				.																		.	.	.	.
Alig confidence				.																		.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		L	P	T	T	I	Q	A	I	S	A	E	A	I	N	L	P	L	T	E	P	A	V	A	A	N	V	L	V	K	V	Q	L	A	D	G	T	L	G	L	G	E	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	A	V	S	G	E	T	Q	T	G	T	S	A	A	I	E	R	.	L
Template Known Secondary structure			T	T	B													B	S															T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T														.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M	M	N	I	I	N
Query Conservation
Alig confidence																												.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template Sequence		Q	S	H	L	L	G	A	D	V	R	G	W	R	K	L	A	A	M	L	D	H	A	E	H	E	A	.	.	.	.	.	.	A	A	A	R	C	G	L	E	M	A	M	L	D	A	L	T	R	H	Y	H	M	P	L	H	V	F	F	G	G	V	S	K	Q	.	.	.	.	.	.	.	L	E	T	D	M	T	I	T
Template Known Secondary structure		G	G	G	T	T	T		B	G	G	G													T	T		.	.	.	.	.	.																			T	T		B					T	T		S		S		.	.	.	.	.	.	.			B
Template Predicted Secondary structure																												.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.							.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V	K	A	A	G	Y
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Sequence		A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	V	H	A	A	A	S	A	K	A	I	L	A	R	G	I	K	S	I	K	V	K	T	A	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	A	Y	D	L	A	R	L	R	A	I	H	Q	A	.	.	.	.	.	.
Template Known Secondary structure			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T										S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template SS confidence
		139	140																	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.															.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	.	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D	K	I	Q	L
Query Conservation																																															.
Alig confidence		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	A	P	T	A	P	L	I	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	C	G	Y	D	V	E	R	A	L	A	F	C	A	A	C	K	A	E	S	I	P	M	V	L	F	E	Q	P	L	P	R	E	D	W	A	G	M	A	Q	V	T	A	Q	S	G	F	A	V	A	A
Template Known Secondary structure		.	.	S	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T																	T	T										S		T	T												S	S	S
Template Predicted Secondary structure		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				183	.	.	.	.	.	.	190	.																		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A	G	Q	I
Query Conservation
Alig confidence		.	.	.																													.																											.
Template Conservation		.	.	.																													.																											.
Template Sequence		.	.	.	D	E	S	A	R	S	A	H	D	V	L	R	I	A	R	E	G	T	A	S	V	I	N	I	K	L	M	K	.	A	G	V	A	E	G	L	K	M	I	A	I	A	Q	A	A	G	L	G	L	M	I	G	G	M	V	.	E	S	I	L	A	M	S	F	S	A	N	L	A	A	G	N	G	G	F
Template Known Secondary structure		.	.	.	S	T	T		S	S											T			S									.																	T								S	S	.
Template Predicted Secondary structure		.	.	.																													.																											.
Template SS confidence
					244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions