Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 90 Aligned Residues 296 % Identity 21% Template c3dfyJ_ PDB info PDB header:isomerase Chain: J: PDB Molecule:muconate cycloisomerase; PDBTitle: crystal structure of apo dipeptide epimerase from2 thermotoga maritima Resolution 2.10 Å

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		3	.	.	.	.	.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		K	I	V	K	I	I	G	R	E	I	.	.	I	D	S	R	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A	V	N	G	P	I	A	Q	A	L	I
Query Conservation												.	.
Alig confidence												.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Sequence		R	I	V	N	V	K	L	S	L	K	R	Y	E	Y	E	K	E	S	R	N	V	E	V	E	I	V	L	E	S	G	V	K	G	Y	G	E	A	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	R	V	N	G	E	R	V	E	A	L	L	A	.	I	E	N	A	V	R	E	M	I	T
Template Known Secondary structure															B														T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	T									T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M	M	N	I	I	N	G	G	E	H	A
Query Conservation
Alig confidence																							.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	D	V	R	N	Y	A	R	I	F	E	I	T	D	R	L	F	G	F	P	.	.	.	.	.	.	.	S	L	K	A	A	V	Q	F	A	T	L	D	A	L	S	Q	E	L	G	T	Q	V	C	Y	L	L	G	G	K	R	D	E	I	E	T	D	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T			G	G	G									T	T		T	T	S		.	.	.	.	.	.	.																		T	T	S						T	T				S				B				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G	K	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	V	G	I	D	T	V	E	N	R	V	K	E	A	K	K	I	F	E	E	G	F	R	V	I	K	I	K	V	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	K	E	D	I	E	A	V	E	E	I	A	K	V	.	.	.	.	.	.	.	.	T	R	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.			S																T	T										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	.	.	.	.	.	.	.	.	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template SS confidence
											135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.																.	.	.	.	.	170	.	.	.	.	.	.	.	.	.									180	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	.	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D	K	I	Q	L	V	G	D	D	L
Query Conservation																																													.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																																.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.
Template Sequence		A	K	Y	I	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	M	G	Y	T	Q	K	E	A	V	E	F	A	R	A	V	Y	Q	K	G	I	D	I	A	V	Y	E	Q	P	V	R	R	E	D	I	E	G	L	K	F	V	R	F	H	S	P	F	P	V	A	A	.	.	.	D	E
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		S															T	T				S						S		T	T													S	S					.	.	.	S	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.
Template SS confidence
		183	.	.	.	.	.																		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240				.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A	G
Query Conservation
Alig confidence																												.																									.
Template Conservation																												.																									.
Template Sequence		S	A	R	T	K	F	D	V	M	R	L	V	K	E	E	A	V	D	Y	V	N	I	K	L	M	K	.	S	G	I	S	D	A	L	A	I	V	E	I	A	E	S	S	G	L	K	L	M	I	G	C	.	M	G	E	S	S	L	G	I	N	Q	S	V	H	F	A	L	G	T	G
Template Known Secondary structure		T		S	S										T	T			S									.															T	T	T								.	S	S
Template Predicted Secondary structure																												.																									.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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