Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 85 Aligned Residues 295 % Identity 18% Template c3cyjA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme-2 like protein from rubrobacter xylanophilus Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.									.	.	.	.	.	.	.	20					.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.									.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.									.	.	.	.
Query Sequence		S	K	I	V	K	I	I	G	R	E	I	.	.	.	.	.	.	.	.	I	D	S	R	G	N	P	T	.	.	.	.	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A
Query Conservation													.	.	.	.	.	.	.	.									.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.									.	.	.	.						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	R	V	E	R	L	E	V	S	A	Y	T	V	P	T	D	Y	P	E	S	D	G	T	L	Q	W	D	S	T	T	M	I	L	V	E	A	.	H	G	G	G	R	K	G	L	G	Y	T	Y	G	D	V	S	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R
Template Known Secondary structure			B																				T	T														.			T	T									S		T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.																									.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.
Template Sequence		F	V	E	S	K	L	A	G	V	A	E	G	S	D	A	L	S	P	P	A	V	W	A	R	M	Q	A	A	I	R	N	A	G	R	P	G	V	G	A	M	A	V	S	A	V	D	I	A	L	W	D	L	K	A	R	L	L	G	L	P	L	A	D	A	L	P	R	F	H	A	E	.	.	.	.	.	.	.	V	P
Template Known Secondary structure							T					T	T	S	B	T	T													T	T	T	T		S	S	T																					T	T		B					S					S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.								130	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	G	S	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	S	Y	P	L	R	R	L	Q	E	Q	L	G	G	W	A	A	A	G	I	P	R	V	K	M	K	V	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	E	K	D	P	E	R	V	R	A	A	R	E	A
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S															T	T										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	G	G
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.															.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.																.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G
Query Conservation
Alig confidence			.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	.	.	.	.	.	.	.	G	E	S	V	E	L	M	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	G	A	Y	T	R	K	Q	A	L	Y	W	A	G	A	F	A	R	E	A	G	I	S	Y	L	E	E	P	V	S	S	E	D	R	E	G	L	R	L	L	R	D	R	G	P
Template Known Secondary structure			.	.	.	.	.	.	.		T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		S																								S	S		T	T												S
Template Predicted Secondary structure			.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183								.	.	.	.	.	.	190	.	.																		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A
Query Conservation
Alig confidence									.															.	.																																					.	.	.	.	.
Template Conservation									.															.	.																																					.	.	.	.	.
Template Sequence		G	G	V	A	I	A	A	.	G	E	Y	E	W	T	L	P	Q	L	H	D	L	A	.	.	G	C	V	D	I	L	Q	A	D	V	T	R	C	G	G	I	T	G	L	L	R	V	D	G	I	C	R	G	H	Q	I	P	F	S	A	H	.	.	.	.	.	C	A	P	A	V	S	A	H	A	C	C	A	V	E	S
Template Known Secondary structure		T	T						.		T	T			S									.	.	T	T		S						T	T	T	T	T						T	T									T							.	.	.	.	.	S									G	G	G		T	T
Template Predicted Secondary structure									.															.	.																																					.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.						.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions