Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 82 Aligned Residues 298 % Identity 20% Template c2zc8B_ PDB info PDB header:metal binding protein Chain: B: PDB Molecule:n-acylamino acid racemase; PDBTitle: crystal structure of n-acylamino acid racemase from thermus2 thermophilus hb8 Resolution 1.95 Å

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		3	.	.	.	.	.	.	10	.	.				.	.	.	.										.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure												.	.	.					.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.					.	.	.	.	.	.	.	.	.
Query Sequence		K	I	V	K	I	I	G	R	E	I	.	.	.	I	D	S	R	.	.	.	.	.	.	.	.	.	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A
Query Conservation												.	.	.					.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.					.	.	.	.	.	.	.	.	.										.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	E	A	A	E	L	R	I	L	E	L	P	L	K	F	R	F	E	T	S	F	G	V	Q	T	K	R	T	I	L	L	L	R	L	.	F	G	E	G	L	E	G	L	G	E	G	V	M	E	R	L	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	E	E	T	V	A	G	A	R	Y	L
Template Known Secondary structure		B																				T	T														.			T	T										B	S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S		B
Template Predicted Secondary structure																																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.															.	.	.	.	.	60	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Sequence		L	E	E	V	F	L	P	R	V	L	G	R	D	L	P	N	P	E	A	L	R	E	A	L	A	P	F	R	G	N	P	.	.	.	.	.	.	.	M	A	K	A	V	L	E	M	A	F	F	D	L	W	A	K	A	L	G	R	P	L	W	Q	V	L	G	G	V	R	Q	.	.	.	.	.	.	.	A	V	E	V
Template Known Secondary structure					T						T	T		B			S									T	T	S		S			.	.	.	.	.	.	.																			T	S	B						T				S	.	.	.	.	.	.	.				B
Template Predicted Secondary structure																																	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.								.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	S	L	G	I	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	E	D	T	L	R	V	V	E	R	H	L	E	E	G	Y	R	R	I	K	L	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	G	W	D	Y	E	V	L	K	A	V	R	E	A	F
Template Known Secondary structure									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S														T	T		S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	T	T	B	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140																.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.																		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.				.
Template Conservation		.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.				.
Template Sequence		.	.	.	.	.	.	.	.	P	E	A	T	L	T	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	S	A	Y	S	L	A	N	L	A	Q	L	.	K	R	L	.	D	E	L	R	L	D	Y	I	E	Q	P	L	A	Y	D	D	L	L	D	H	A	K	L	Q	R	E	L	S	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T				G	G	G					.			G	.	G	G	G	T		S						S		T	T		S											S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.				.
Template SS confidence
										181	.	.	.	.	.	.	.																		.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A	G
Query Conservation
Alig confidence						.	.	.																																																								.
Template Conservation						.	.	.																																																								.
Template Sequence		P	I	C	L	.	.	.	D	E	S	L	T	G	A	E	K	A	R	K	A	I	E	L	G	A	G	R	V	F	N	V	K	P	A	R	L	G	G	H	G	E	S	L	R	V	H	A	L	A	E	S	A	G	I	P	L	W	M	G	G	M	L	.	E	A	G	V	G	R	A	H	N	L	H	L	A	T	L	P	G
Template Known Secondary structure						.	.	.	S	T	T			S											T			S										T	S														T	T										.													T	T	S	T	T
Template Predicted Secondary structure						.	.	.																																																								.
Template SS confidence
		234	.	.	.				.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		391	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T
Template Known Secondary structure		B
Template Predicted Secondary structure
Template SS confidence
		310	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions