Phyre 2 alignment of P0A6P9 with c2qjjC

Job Description P0A6P9
Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012

Rank 22 Aligned Residues 314

% Identity 20% Template c2qjjC_

PDB info PDB header:lyase Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	I	V	K	I	I	G	R	E	I	I	D	S	R	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A	V	N	G	P	I	A	Q	A	L	I	G	K
Query Conservation
Alig confidence						.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	I	T	A	A	.	.	R	V	I	I	T	C	P	G	R	N	F	V	T	L	K	I	E	T	D	Q	G	V	Y	G	I	G	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	N	G	R	E	L	S	V	V	A	Y	L	Q	E	H	V	A	P	C	L	I	G	M
Template Known Secondary structure						.	.							S	S	S										T	T	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T												T						T	T	S
Template Predicted Secondary structure						.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2	.	.	.	.			.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.																						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.

	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M	M	N	I	I	N	G	G	E	H	A	D	N
Query Conservation
Alig confidence																			.																																								.	.	.	.	.	.											.	.	.	.	.	.
Template Conservation																			.																																								.	.	.	.	.	.											.	.	.	.	.	.
Template Sequence	D	P	R	R	I	E	D	I	W	Q	Y	V	Y	R	G	A	Y	W	.	R	R	G	P	V	T	M	R	A	I	A	A	V	D	M	A	L	W	D	I	K	A	K	M	A	G	M	P	L	Y	Q	L	L	G	G	R	S	R	D	.	.	.	.	.	.	G	I	M	V	Y	G	H	A	N	G	.	.	.	.	.	.
Template Known Secondary structure		T	T													T	S	S	.																										T	S	B						T			S		S	.	.	.	.	.	.	S										.	.	.	.	.	.
Template Predicted Secondary structure																			.																																								.	.	.	.	.	.											.	.	.	.	.	.
Template SS confidence
	59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.							.	.	.	.	120	.	.	.	.	.

	163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G	K	D	I	T
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	S	D	I	A	E	T	V	E	A	V	G	H	Y	I	D	M	G	Y	K	A	I	R	A	Q	T	G	V	P	G	I	S	L	P	S	V	T	G	W	D	T	R	K	A	L	N	Y	V	P	K	L	F	E	E	L	R	K	T	Y	.	.	.	.	.	.	.	G	F	D	H	H
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	S	S														T	T		S									T	T																T	T													.	.	.	.	.	.	.		S	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.
Template SS confidence
											126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.

	243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D	K	I	Q	L	V	G	D	D	L	F	V	T
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																		.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																		.	.	.
Template Sequence	L	L	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	H	R	Y	T	P	Q	E	A	A	N	L	G	K	M	L	.	E	P	Y	Q	L	F	W	L	E	D	C	T	P	A	E	N	Q	E	A	F	R	L	V	R	Q	H	T	V	T	P	L	A	V	.	.	.	G	E	I	F	N
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		S													.	G	G	G			S				S		S			S	S	G	G	G	G									S					.	.	.		T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																		.	.	.
Template SS confidence
	207	.	.	210																		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.

	323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	T	I	W	D	A	K	D	L	I	Q	N	Q	L	I	D	Y	I	R	A	T	V	V	G	A	G	G	L	T	H	L	R	R	I	A	D	L	A	S	L	Y	Q	V	R	T	G	C	H	G	A	T	D	L	S	P	V	T	M	G	C	A	L	H	F	D	T	W	V	P
Template Known Secondary structure	S	G	G	G	T						T	T			S						T	T	T	T	T															T	T									T	T	S																T
Template Predicted Secondary structure
Template SS confidence
	266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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