Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 92 Aligned Residues 299 % Identity 16% Template c2qddA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of a member of enolase superfamily from roseovarius2 nubinhibens ism Resolution 2.30 Å

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		3	.	.	.	.	.	.	10	.	.									.	.	.	.	.	.	.	20					.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure												.	.	.	.	.	.	.	.									.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.									.	.	.	.
Query Sequence		K	I	V	K	I	I	G	R	E	I	.	.	.	.	.	.	.	.	I	D	S	R	G	N	P	T	.	.	.	.	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A
Query Conservation												.	.	.	.	.	.	.	.									.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.									.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	T	R	L	T	V	F	H	L	D	L	P	L	A	K	P	Y	W	L	S	G	L	K	F	D	R	L	D	S	T	Y	L	R	I	D	T	D	E	G	V	T	G	W	G	E	G	C	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	G	H	S	Y	L	P	A	H	G	P	G	L	R	A
Template Known Secondary structure																																							T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T	T	S	S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M
Query Conservation
Alig confidence																																	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.
Template Sequence		G	I	A	T	L	A	P	H	L	L	G	L	D	P	R	S	L	D	H	V	N	R	V	M	D	L	Q	L	P	G	H	.	.	.	.	.	.	S	Y	V	K	S	P	I	D	M	A	C	W	D	I	L	G	Q	V	A	G	L	P	L	W	Q	L	L	G	G	E	A	A	T	P	V	P	I	N	S	S	I	S	T
Template Known Secondary structure											T	T			T	T													S		S		.	.	.	.	.	.																				T		B					T	T		S	S						B						S
Template Predicted Secondary structure																																	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	D	Q	M	L	G	L	I	A	E	A	A	A	Q	G	Y	R	T	H	S	A	K	I	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	A	Q	D	I	A	R	I	E	A	I	S	A	G	L
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T										S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.															S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142																							.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.															170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.					.	.											.	.
Template Conservation		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.					.	.											.	.
Template Sequence		.	.	.	.	.	.	.	P	D	G	H	R	V	T	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	R	A	W	T	P	A	I	A	V	E	V	L	N	S	V	.	R	A	R	D	.	.	W	I	E	Q	P	C	Q	T	L	D	.	.	Q	C	A	H	V	A	R	R	V	A	N
Template Known Secondary structure		.	.	.	.	.	.	.		T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T												T	S		.					.	.						S	S	S			.	.							T	T			S
Template Predicted Secondary structure		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.					.	.											.	.
Template SS confidence
									186	.	.	.	190	.	.	.	.																		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.			.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A	G
Query Conservation
Alig confidence						.	.	.																																																						.
Template Conservation						.	.	.																																																						.
Template Sequence		P	I	M	L	.	.	.	D	E	C	L	H	E	F	S	D	H	L	A	A	W	S	R	G	A	C	E	G	V	K	I	K	P	N	R	V	G	G	L	T	R	A	R	Q	I	R	D	F	G	V	S	V	G	W	Q	M	H	I	E	D	.	V	G	G	T	A	L	A	D	T	A	A	L	H	L	A	A	S	T	P
Template Known Secondary structure						.	.	.		T	T			S											T			S										T	S															T								.	S	S															T	S
Template Predicted Secondary structure						.	.	.																																																						.
Template SS confidence
		237	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		391	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		313	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions