Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 46 Aligned Residues 299 % Identity 22% Template c2pp1C_ PDB info PDB header:lyase Chain: C: PDB Molecule:l-talarate/galactarate dehydratase; PDBTitle: crystal structure of l-talarate/galactarate dehydratase from2 salmonella typhimurium lt2 liganded with mg and l-lyxarohydroxamate Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20																			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	I	V	K	I	I	G	R	E	I	I	D	S	R	G	N	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	R	I	E	W	V	K	L	S	L	A	F	L	P	L	A	T	P	V	S	D	A	K	V	L	T	G	R	Q	K	P	L	T	E	V	A	I	I	I	A	E	I	R	S	R	D	G	F	E	G	V	G	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	K	R	A
Template Known Secondary structure																											T	T	S	S																T	T	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	T
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.																						80	.	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	K	A	V	A	A	V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K
Query Conservation
Alig confidence																																																																														.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		G	G	Q	G	I	Y	A	H	A	K	E	I	A	D	N	L	L	G	E	D	P	N	D	I	D	K	I	Y	T	K	L	L	W	A	G	A	S	V	G	R	S	G	M	A	V	Q	A	I	S	P	I	D	I	A	L	W	D	M	K	A	K	R	A	G	L	P	L	A	K	L	L	G	A	H	R	D	.	.	.	.
Template Known Secondary structure		T												G	G	G	G	T	T			T	T													T	G	G	G		S	S	T																					T	T	S	B								S		S	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	M	P	V	P	M	M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L
Query Conservation
Alig confidence		.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	S	V	Q	C	Y	N	T	S	G	G	F	L	H	T	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	D	Q	V	L	K	N	V	V	I	S	R	E	N	G	I	G	G	I	K	L	K	V	G	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	C	A	E	D	I	R	R	L
Template Known Secondary structure		.	.	.								T	T	S		T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					161	.	.	.	.	.	.	.	.	170	.	.	.	.														.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.															.	.	.	.	.	.	.	.	210
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y
Query Conservation
Alig confidence									.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation									.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		T	A	V	R	E	A	L	.	.	.	.	.	.	.	G	D	E	F	P	L	M	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	Q	Q	W	D	R	E	T	A	I	R	M	G	R	K	M	.	E	Q	F	N	L	I	W	I	E	E	P	L	D	A	Y	D	I	E	G	H	A	Q
Template Known Secondary structure									.	.	.	.	.	.	.		S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T															.	G	G	G			S						S		T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		211	.	.	.	.	.	.								.	.	220	.	.	.	.	.	.																		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	K	V	L	G	D	K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L
Query Conservation
Alig confidence													.	.	.																																																					.	.	.	.	.	.	.
Template Conservation													.	.	.																																																					.	.	.	.	.	.	.
Template Sequence		L	A	A	A	L	D	T	P	I	A	T	.	.	.	G	E	M	L	T	S	F	R	E	H	E	Q	L	I	L	G	N	A	S	D	F	V	Q	P	D	A	P	R	V	G	G	I	S	P	F	L	K	I	M	D	L	A	A	K	H	G	R	K	L	A	P	H	.	.	.	.	.	.	.	F	A	M	E	V	H	L
Template Known Secondary structure							S	S					.	.	.		T	T			S										T	T			S										T	S														T	T							.	.	.	.	.	.	.	S
Template Predicted Secondary structure													.	.	.																																																					.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.								.	330	.	.	.	.	.
		384	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	T	A	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	L	S	A	A	Y	P
Template Known Secondary structure						T		S
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions