Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 98 Aligned Residues 298 % Identity 18% Template c2pmqA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from roseovarius sp. htcc2601 Resolution 1.72 Å

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		3	.	.	.	.	.	.	10	.	.					.	.	.										.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.				.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.				.	.	.	.	.	.	.	.	.
Query Sequence		K	I	V	K	I	I	G	R	E	I	.	.	.	.	I	D	S	.	.	.	.	.	.	.	.	.	R	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A
Query Conservation												.	.	.	.				.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.				.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	A	E	I	Q	L	F	Q	H	D	L	P	V	V	N	G	P	Y	R	I	A	S	G	D	V	W	S	L	T	T	T	I	V	K	I	I	A	E	D	G	T	I	G	W	G	E	T	C	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	P	T	Y	A	E	A	H	A	G	G	A	L
Template Known Secondary structure																T	T			B			T	T			B	S												T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S	S	S	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.
Template Sequence		A	A	L	E	V	L	A	S	G	L	A	G	A	E	A	L	P	L	P	L	H	T	R	X	D	S	L	L	C	G	H	N	.	.	.	.	.	.	.	Y	A	K	S	A	L	D	I	A	V	H	D	L	W	G	K	R	L	G	V	P	V	H	E	L	L	G	G	A	L	T	D	S	V	S	S	Y	Y	S	L	G
Template Known Secondary structure										T	T	T	T			S	S													S				.	.	.	.	.	.	.																			T		B					T	T			S		S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.								.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	X	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	D	E	A	A	R	Q	A	L	E	K	Q	R	E	G	Y	S	R	L	Q	V	K	L	G	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	E	I	D	I	E	A	I	R	K	V	W	E	A
Template Known Secondary structure		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T		S								S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140																							.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.															.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G
Query Conservation
Alig confidence			.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.						.							.	.
Template Conservation			.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.						.							.	.
Template Sequence		V	.	.	.	.	.	.	R	G	T	G	I	A	L	A	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	R	G	W	T	T	R	D	A	L	R	F	S	R	E	C	.	P	D	I	P	F	.	V	X	E	Q	P	C	.	.	N	S	F	E	D	L	E	A	I	R	P	L	C	H
Template Known Secondary structure			.	.	.	.	.	.	T	T	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T															.	T	T	S			.				S		S	.	.	S	S								G	G	G
Template Predicted Secondary structure			.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.						.							.	.
Template SS confidence
		183							.	.	.	.	.	.	190	.	.	.																		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.		.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A
Query Conservation
Alig confidence							.	.	.																																																								.
Template Conservation							.	.	.																																																								.
Template Sequence		H	A	L	Y	X	.	.	.	D	E	D	G	T	S	L	N	T	V	I	T	A	A	A	T	S	L	V	D	G	F	G	X	K	V	S	R	I	G	G	L	Q	H	X	R	A	F	R	D	F	C	A	A	R	N	L	P	H	T	C	D	D	A	W	.	G	G	D	I	V	S	A	A	C	T	H	I	A	S	T	V
Template Known Secondary structure		S					.	.	.	S	T	T			S										T	T			S					B					T	S															T						B		S	S	.		S												T	T	S
Template Predicted Secondary structure							.	.	.																																																								.
Template SS confidence
		236	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		390
Predicted Secondary structure
Query SS confidence
Query Sequence		G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		312

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions