Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 112 Aligned Residues 296 % Identity 16% Template c2pgeA_ PDB info PDB header:lyase Chain: A: PDB Molecule:menc; PDBTitle: crystal structure of menc from desulfotalea psychrophila2 lsv54 Resolution 1.60 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A	V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L
Query Conservation
Alig confidence										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		K	P	T	W	F	V	R	L	.	D	I	D	G	H	G	G	Q	G	E	V	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	G	L	S	L	D	P	E	E	Q	I	G	R	E	L	D	L	.	L	A	R	R	L	R	A	E	E	P	I	R	L	R	Q	F	L	A	E	R	G	G	A
Template Known Secondary structure										.			T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T		S	S												.								S												T	S	S
Template Predicted Secondary structure										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50																	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		98	.	100	.	.	.	.																		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	G	T	E	N	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M	M	N	I	I	N	G	G	E	H	A
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.									.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.									.	.	.	.	.
Template Sequence		D	F	S	D	Y	R	S	V	L	T	D	I	A	G	I	L	D	S	W	Q	V	S	T	D	G	R	F	P	A	L	R	F	A	L	E	M	A	L	L	D	L	L	S	G	G	R	Q	E	W	F	A	S	D	F	T	R	G	E	K	R	.	.	.	.	.	.	.	I	P	V	N	G	L	I	W	.	.	.	.	.
Template Known Secondary structure		T	T	S																T	T	S	S	T	T	S	S																		T	S	S	S		S	S		S	T	T	T	T	T	S			.	.	.	.	.	.	.			B						.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.									.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.								.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G	.	K
Query Conservation																																																																																.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.		.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	M	G	E	A	A	F	M	Q	E	Q	I	E	A	K	L	A	E	G	Y	G	C	L	K	L	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	D	K	E	C	A	L	L	A	G	I	R	E	S	F	.	.	.	.	.	.	.	S	P	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.																	T	T		S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																S	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
													160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.								.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D	K	I	Q	L	V	G	D	D	L
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																		.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																		.	.	.
Template Sequence		Q	L	E	I	R	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	G	A	F	S	P	A	N	A	P	Q	R	L	K	R	L	.	S	Q	F	H	L	H	S	I	E	Q	P	I	R	Q	H	Q	W	S	E	M	A	A	L	C	A	N	S	P	L	A	I	A	L	.	.	.	D	E
Template Known Secondary structure		T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	B	B		T	T	T									.		T	T			S						B		S	S													S	S					.	.	.	S	G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																		.	.	.
Template SS confidence
		208	.	210	.	.	.	.																		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.
		320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		F	V	T	N	T	K	I	L	K	E	G	.	.	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A	G	Q	I	K	T	G	S	M
Query Conservation													.	.
Alig confidence													.	.																																											.
Template Conservation																																																									.
Template Sequence		E	L	I	G	L	G	A	E	Q	R	S	A	M	L	D	A	I	R	P	Q	Y	I	I	L	K	P	S	L	L	G	G	F	H	Y	A	G	Q	W	I	E	L	A	R	E	R	G	I	G	F	W	I	T	S	A	L	.	E	S	N	L	G	L	A	A	I	A	Q	W	T	A	L	Y	Q	P	T	M	P	Q	G	L
Template Known Secondary structure		G	G	T	T			T													S										T	S														T	T						B			S	.															T	T			S	S		B	B
Template Predicted Secondary structure																																																									.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		398	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	T	G
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		346	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions