Phyre 2 alignment of P0A6P9 with c2oo6A

Job Description P0A6P9
Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012

Rank 41 Aligned Residues 332

% Identity 16% Template c2oo6A_

PDB info PDB header:isomerase Chain: A: PDB Molecule:putative l-alanine-dl-glutamate epimerase; PDBTitle: crystal structure of putative l-alanine-dl-glutamate epimerase from2 burkholderia xenovorans strain lb400

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	I	V	K	I	I	G	R	E	I	I	D	S	R	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A	V	N	G	P	I	A	Q	A	L	I	G	K
Query Conservation
Alig confidence									.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	V	V	S	V	D	T	L	.	C	C	D	A	G	W	R	N	Y	H	F	V	K	L	T	T	D	E	G	I	V	G	W	S	E	F	D	E	G	F	G	S	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	A	V	I	E	Q	L	G	K	R	L	V	G	A
Template Known Secondary structure	B								.					S	S	S										T	T										S	T	T	T		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	S
Template Predicted Secondary structure									.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.

	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M	M	N	I	I	N	G	G	E	H	A	D	N
Query Conservation
Alig confidence																	.																																										.	.	.	.	.	.
Template Conservation																	.																																										.	.	.	.	.	.
Template Sequence	S	V	M	E	H	E	R	F	F	A	E	A	Y	C	L	T	.	R	P	A	T	G	G	V	V	S	E	G	I	G	A	I	E	N	A	L	L	D	A	K	A	K	T	L	N	V	P	C	Y	E	L	L	G	G	K	L	R	D	.	.	.	.	.	.	R	V	P	V	Y	W	S	H	C	P	T	W	R	I	N	H
Template Known Secondary structure	B	T	T													T	.	G	G	G		S																						T	T	S	B	G	G	G	G	T	T			S		S	.	.	.	.	.	.								S	T	T
Template Predicted Secondary structure																	.																																										.	.	.	.	.	.
Template SS confidence
	59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.							.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.

	163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	.	.	.	.	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G
Query Conservation																																								.	.	.	.
Alig confidence													.	.																										.	.	.	.
Template Conservation													.	.
Template Sequence	P	K	F	F	G	P	P	V	T	D	L	D	.	.	G	V	K	R	T	A	E	E	A	R	E	R	Q	F	R	A	I	K	T	N	I	F	I	H	D	D	G	P	L	H	A	W	R	P	G	F	A	V	P	F	Q	P	A	L	N	V	D	R	K	V	L	R	N	L	R	A	H	L	E	A	L	R	D	G	A	G
Template Known Secondary structure	T	T	T	S	S	S				S			.	.												T	T												S	S	S	S					B	G	G	G	T	B	S			T	T
Template Predicted Secondary structure													.	.
Template SS confidence
	132	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D	K	I	Q	L	V	G	D	D
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.													.	.																				.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.													.	.																				.	.	.
Template Sequence	P	D	V	E	I	L	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	F	N	A	K	P	E	G	Y	L	K	I	L	R	E	L	.	A	D	F	D	L	F	W	V	E	I	D	S	.	.	Y	S	P	Q	G	L	A	Y	V	R	N	H	S	P	H	P	I	S	S	.	.	.	C
Template Known Secondary structure	S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		S												T	.	T	T	S			S							.	.	S											T		S	S					.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.													.	.																				.	.	.
Template SS confidence
	210	.	.	.	.	.	.	.																		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.				.

	319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A	G	Q	I
Query Conservation
Alig confidence																										.																											.	.
Template Conservation																										.																											.	.
Template Sequence	E	T	L	F	G	I	R	E	F	K	P	F	F	D	A	N	A	V	D	V	A	I	V	D	T	.	I	W	N	G	V	W	Q	S	M	K	I	A	A	F	A	D	A	H	D	I	N	V	A	P	H	N	.	.	F	Y	G	H	L	C	T	M	I	N	A	N	F	A	A	A	V	P	N	L
Template Known Secondary structure	T	T													T	T			S							.																		T	T								.	.		S																S	S	B
Template Predicted Secondary structure																										.																											.	.
Template SS confidence
	267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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