Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 20 Aligned Residues 355 % Identity 15% Template c2o56D_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative mandelate racemase; PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	K	I	V	K	I	I	G	R	E	I	I	D	S	R	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A	V	N	G	P	I	A	Q	A	L	I
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	M	K	I	T	S	V	D	I	I	D	V	A	N	D	F	K	W	R	P	V	V	V	K	I	N	T	D	E	G	I	S	G	F	G	E	V	G	L	A	Y	G	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	A	G	I	G	M	A	K	D	L	S	A	I	I	I
Template Known Secondary structure																													T	T	S								S		S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	.	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M	M	N	I	I	N	G	G	E	H
Query Conservation																						.
Alig confidence																						.																																									.	.	.	.	.	.							.	.
Template Conservation																																																															.	.	.	.	.	.							.	.
Template Sequence		G	M	D	P	M	N	N	E	A	I	W	E	K	M	L	K	K	T	F	W	G	Q	G	G	G	G	I	F	S	A	A	M	S	G	I	D	I	A	L	W	D	I	K	G	K	A	W	G	V	P	L	Y	K	M	L	G	G	K	S	R	E	.	.	.	.	.	.	K	I	R	T	Y	A	.	.	S	Q	L	Q	F
Template Known Secondary structure		T	S		T	T												S	S	S	G	G	G	G																									T		B					T	T			S		S	.	.	.	.	.	.							.	.			G	G	G
Template Predicted Secondary structure																																																															.	.	.	.	.	.							.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.			.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G	K
Query Conservation
Alig confidence																			.	.																																							.	.	.
Template Conservation																			.	.																																							.	.	.
Template Sequence		G	W	G	D	G	S	D	K	D	M	L	T	E	P	E	Q	Y	.	.	A	Q	A	A	L	T	A	V	S	E	G	Y	D	A	I	K	V	D	T	V	A	M	D	R	H	G	N	W	N	Q	Q	N	L	N	G	P	L	T	.	.	.	D	K	I	L	R	L	G	Y	D	R	M	A	A	I	R	D	A	V	G	P
Template Known Secondary structure				S	T	T		T	T					S					.	.										T	T		S							S	S	B		T	T	S		B	S		S				S	S			.	.	.																				T
Template Predicted Secondary structure																			.	.																																							.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D	K	I	Q	L	V	G	D	D	L
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																		.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																		.	.	.
Template Sequence		D	V	D	I	I	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	H	A	F	T	D	T	T	S	A	I	Q	F	G	R	M	I	.	E	E	L	G	I	F	Y	Y	E	E	P	V	M	P	L	N	P	A	Q	M	K	Q	V	A	D	K	V	N	I	P	L	A	A	.	.	.	G	E
Template Known Secondary structure		T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		S													.	G	G	G								S	S		S	S	S													S					.	.	.		T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																		.	.	.
Template SS confidence
		213	.	.	.	.	.	.																		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.				270	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A	G	Q	I	K	T	G	S	M	S	R
Query Conservation
Alig confidence																																																						.	.
Template Conservation																																																						.	.
Template Sequence		R	I	Y	W	R	W	G	Y	R	P	F	L	E	N	G	S	L	S	V	I	Q	P	D	I	C	T	C	G	G	I	T	E	V	K	K	I	C	D	M	A	H	V	Y	D	K	T	V	Q	I	H	V	C	.	.	G	G	P	I	S	T	A	V	A	L	H	M	E	T	A	I	P	N	F	V	I	H	E	L	H	R
Template Known Secondary structure		T													T	T			S						T	T	T	T	T														T	T	T									.	.	S																S	S	B							G
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	R	V	A	K	Y	N	Q	L	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	A	L	L	E	P	N	T	Q	T	C	K
Template Known Secondary structure		G	G	G	S					T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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